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(-) Description

Title :  CRYSTAL STRUCTURE OF RHODOSTOMIN R46E MUTANT
 
Authors :  C. H. Huang, J. H. Shiu, Y. T. Chang, W. Y. Jeng, W. J. Chuang
Date :  22 Aug 14  (Deposition) - 26 Aug 15  (Release) - 26 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.81
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Rgd Motif, Disintegrin, Integrin, Toxin, Rhodostomin, Linker Region (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. H. Huang, J. H. Shiu, Y. T. Chang, W. Y. Jeng, W. J. Chuang
Effects Of The Regions Adjacent To The Rgd Motif In Disintegrins On Their Inhibitory Activities And Structures
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DISINTEGRIN RHODOSTOMIN
    Chains: A, B
    Engineered: YES
    Expression System: PICHIA PASTORIS
    Expression System Strain: X-33
    Expression System Taxid: 4922
    Expression System Vector Type: PLASMID
    Fragment: DISINTEGRIN MUTANT, UNP RESIDUES 408-475
    Gene: RHOD
    Mutation: YES
    Organism Common: MALAYAN PIT VIPER
    Organism Scientific: CALLOSELASMA RHODOSTOMA
    Organism Taxid: 8717
    Synonym: RHO, RHOD, DISINTEGRIN KISTRIN, PLATELET AGGREGATION ACTIVATION INHIBITOR

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4R5U)

(-) Sites  (0, 0)

(no "Site" information available for 4R5U)

(-) SS Bonds  (12, 12)

Asymmetric Unit
No.Residues
1A:4 -A:19
2A:6 -A:14
3A:13 -A:36
4A:27 -A:33
5A:32 -A:57
6A:45 -A:64
7B:4 -B:19
8B:6 -B:14
9B:13 -B:36
10B:27 -B:33
11B:32 -B:57
12B:45 -B:64

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4R5U)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4R5U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4R5U)

(-) Exons   (0, 0)

(no "Exon" information available for 4R5U)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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Chain A from PDB  Type:PROTEIN  Length:64
                                                                                               
               SCOP domains ---------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author .............................ee..ee.....eee........ee........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                  4r5u A  4 CDCSSPENPCCDAATCKLRPGAQCGEGLCCEQCKFSRAGKICEIPRGDMPDDRCTGQSADCPRY 67
                                    13        23        33        43        53        63    


Chain B from PDB  Type:PROTEIN  Length:64
                                                                                               
               SCOP domains ---------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author .............................ee..ee.....eee........ee........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                  4r5u B  4 CDCSSPENPCCDAATCKLRPGAQCGEGLCCEQCKFSRAGKICEIPRGDMPDDRCTGQSADCPRY 67
                                    13        23        33        43        53        63
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4R5U)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4R5U)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4R5U)

(-) Gene Ontology  (8, 8)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        VM2RH_CALRH | P30403: 1n4y 1q7i 1q7j 2ljv 2m75 2m7f 2m7h 2pjf 2pjg 2pji 3uci 4m4c 4r5r 4rqg

(-) Related Entries Specified in the PDB File

4r5r