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(-) Description

Title :  CRYSTAL STRUCTURE OF A CYSTATIN-LIKE PROTEIN (BACCAC_01506) FROM BACTEROIDES CACCAE ATCC 43185 AT 1.69 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  19 Aug 14  (Deposition) - 01 Oct 14  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.69
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Cystatin-Like Fold, Divergent Member Of Pf14254 Family (Duf4348), Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Hypothetical Protein (Baccac_01506) From Bacteroides Caccae Atcc 43185 At 1. 69 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: PB1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BACCAC_01506
    Organism Scientific: BACTEROIDES CACCAE
    Organism Taxid: 411901
    Strain: ATCC 43185

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 27)

Asymmetric Unit (5, 27)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2CL2Ligand/IonCHLORIDE ION
3GOL4Ligand/IonGLYCEROL
4MSE4Mod. Amino AcidSELENOMETHIONINE
5PEU13Ligand/Ion2,5,8,11,14,17,20,23,26,29,32,35,38,41,44,47,50,53,56,59,62,65,68,71,74,77,80-HEPTACOSAOXADOOCTACONTAN-82-OL
Biological Unit 1 (3, 7)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2CL-1Ligand/IonCHLORIDE ION
3GOL-1Ligand/IonGLYCEROL
4MSE1Mod. Amino AcidSELENOMETHIONINE
5PEU3Ligand/Ion2,5,8,11,14,17,20,23,26,29,32,35,38,41,44,47,50,53,56,59,62,65,68,71,74,77,80-HEPTACOSAOXADOOCTACONTAN-82-OL
Biological Unit 2 (3, 6)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2CL-1Ligand/IonCHLORIDE ION
3GOL2Ligand/IonGLYCEROL
4MSE1Mod. Amino AcidSELENOMETHIONINE
5PEU3Ligand/Ion2,5,8,11,14,17,20,23,26,29,32,35,38,41,44,47,50,53,56,59,62,65,68,71,74,77,80-HEPTACOSAOXADOOCTACONTAN-82-OL
Biological Unit 3 (2, 6)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2CL-1Ligand/IonCHLORIDE ION
3GOL-1Ligand/IonGLYCEROL
4MSE1Mod. Amino AcidSELENOMETHIONINE
5PEU5Ligand/Ion2,5,8,11,14,17,20,23,26,29,32,35,38,41,44,47,50,53,56,59,62,65,68,71,74,77,80-HEPTACOSAOXADOOCTACONTAN-82-OL
Biological Unit 4 (4, 6)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CL-1Ligand/IonCHLORIDE ION
3GOL2Ligand/IonGLYCEROL
4MSE1Mod. Amino AcidSELENOMETHIONINE
5PEU2Ligand/Ion2,5,8,11,14,17,20,23,26,29,32,35,38,41,44,47,50,53,56,59,62,65,68,71,74,77,80-HEPTACOSAOXADOOCTACONTAN-82-OL

(-) Sites  (22, 22)

Asymmetric Unit (22, 22)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:60 , LYS A:146 , HOH A:428BINDING SITE FOR RESIDUE ACT A 201
02AC2SOFTWAREGLU A:99 , ASN A:117 , HOH A:311BINDING SITE FOR RESIDUE ACT A 202
03AC3SOFTWAREGLU A:125 , ARG A:136 , HOH A:381BINDING SITE FOR RESIDUE ACT A 203
04AC4SOFTWARELEU A:91 , ASP A:134 , THR A:154 , TRP A:156 , GLU A:176 , HOH A:325 , HOH A:335BINDING SITE FOR RESIDUE PEU A 204
05AC5SOFTWARETYR A:128 , HOH A:415 , GLU C:95BINDING SITE FOR RESIDUE PEU A 205
06AC6SOFTWAREASP A:93 , GLU A:95 , ALA A:179 , ILE A:183 , HIS A:184 , HOH A:352 , HOH A:383 , PHE C:180 , ILE C:183BINDING SITE FOR RESIDUE PEU A 206
07AC7SOFTWAREGLU A:103BINDING SITE FOR RESIDUE CL A 207
08AC8SOFTWARELYS B:44 , GLU B:99 , PHE B:114 , ASN B:117 , LYS B:122 , HOH B:319BINDING SITE FOR RESIDUE GOL B 201
09AC9SOFTWARETHR B:81 , PHE B:82 , PRO B:83 , HOH B:432 , PRO D:68 , HOH D:394 , HOH D:457BINDING SITE FOR RESIDUE GOL B 202
10BC1SOFTWAREARG B:136 , GLU B:138 , ASP B:151 , CYS B:152 , TYR B:153 , HOH B:440 , PEU C:201 , HOH C:416BINDING SITE FOR RESIDUE PEU B 203
11BC2SOFTWARETHR B:96 , ILE B:102 , GLN B:104 , HOH B:386BINDING SITE FOR RESIDUE PEU B 204
12BC3SOFTWARELEU B:91 , TRP B:156 , HOH B:310 , HOH B:381BINDING SITE FOR RESIDUE PEU B 205
13BC4SOFTWAREGLU B:132 , ILE B:133 , ARG B:136 , PEU B:203 , HOH B:335 , GLU C:132 , ILE C:133 , ARG C:136 , GLU C:138 , ASP C:151 , CYS C:152 , TYR C:153BINDING SITE FOR RESIDUE PEU C 201
14BC5SOFTWAREGLY C:155 , TYR C:157 , TYR C:159 , LEU C:161 , HOH C:451BINDING SITE FOR RESIDUE PEU C 202
15BC6SOFTWAREASP C:134 , THR C:154 , GLY C:155 , TRP C:156 , HOH C:401BINDING SITE FOR RESIDUE PEU C 204
16BC7SOFTWARELYS C:44 , GLU C:99 , PHE C:114 , ASN C:117 , HOH C:309 , HOH C:334 , HOH C:402BINDING SITE FOR RESIDUE PEU C 205
17BC8SOFTWAREILE C:109 , GLU C:129 , GLU C:130 , HOH C:366BINDING SITE FOR RESIDUE CL C 206
18BC9SOFTWARELYS D:44 , ASN D:117 , HOH D:418 , HOH D:462BINDING SITE FOR RESIDUE ACT D 201
19CC1SOFTWAREHOH C:335 , LYS D:49 , PHE D:56 , ARG D:60 , LYS D:146BINDING SITE FOR RESIDUE GOL D 202
20CC2SOFTWAREPRO D:68 , ILE D:69 , THR D:70 , TYR D:153 , TYR D:157 , HOH D:324 , HOH D:403BINDING SITE FOR RESIDUE GOL D 203
21CC3SOFTWARELEU D:91 , ASP D:134 , TRP D:156 , GLU D:176 , HOH D:307BINDING SITE FOR RESIDUE PEU D 204
22CC4SOFTWAREPRO C:68 , HOH C:363 , HOH C:379 , GLU D:125 , ARG D:136BINDING SITE FOR RESIDUE PEU D 205

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4R4K)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Phe A:63 -Pro A:64
2Phe B:63 -Pro B:64
3Phe C:63 -Pro C:64
4Phe D:63 -Pro D:64

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4R4K)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4R4K)

(-) Exons   (0, 0)

(no "Exon" information available for 4R4K)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:151
                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhh........eeee......eeee..hhhhh..........eeeee....eeeeeeeeee..eeeeeeee......eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r4k A  35 EIAQSGEDFKSFLDKFTSSAAFQYTRIKFPLKTPITLLADDGETEKTFPFTKEKWPLLDSETmKEERIEQEEGGIYVSKFTLNEPVHKVFEAGYEESEIDLRVEFEQAADGKWYVVDCYTGWYGYDLPIGELKQTIQQVKEENAAFKEIHP 185
                                    44        54        64        74        84        94  |    104       114       124       134       144       154       164       174       184 
                                                                                         97-MSE                                                                                    


Chain B from PDB  Type:PROTEIN  Length:152
                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhh........eeee......eeee..hhhhh..........eeeee...eeeeeeeeeee..eeeeeeee......eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r4k B  34 NEIAQSGEDFKSFLDKFTSSAAFQYTRIKFPLKTPITLLADDGETEKTFPFTKEKWPLLDSETmKEERIEQEEGGIYVSKFTLNEPVHKVFEAGYEESEIDLRVEFEQAADGKWYVVDCYTGWYGYDLPIGELKQTIQQVKEENAAFKEIHP 185
                                    43        53        63        73        83        93   |   103       113       123       133       143       153       163       173       183  
                                                                                          97-MSE                                                                                    


Chain C from PDB  Type:PROTEIN  Length:151
                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhh........eeee......eeee..hhhhh..........eeeee....eeeeeeeeee..eeeeeeee......eeeeeee.....eeeeeeee......ee..hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r4k C  35 EIAQSGEDFKSFLDKFTSSAAFQYTRIKFPLKTPITLLADDGETEKTFPFTKEKWPLLDSETmKEERIEQEEGGIYVSKFTLNEPVHKVFEAGYEESEIDLRVEFEQAADGKWYVVDCYTGWYGYDLPIGELKQTIQQVKEENAAFKEIHP 185
                                    44        54        64        74        84        94  |    104       114       124       134       144       154       164       174       184 
                                                                                         97-MSE                                                                                    


Chain D from PDB  Type:PROTEIN  Length:148
                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhh........eeeeehhhheeeee..hhhhh..........eeeee....eeeeeeeeee..eeeeeeee....eeeeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r4k D  38 QSGEDFKSFLDKFTSSAAFQYTRIKFPLKTPITLLADDGETEKTFPFTKEKWPLLDSETmKEERIEQEEGGIYVSKFTLNEPVHKVFEAGYEESEIDLRVEFEQAADGKWYVVDCYTGWYGYDLPIGELKQTIQQVKEENAAFKEIHP 185
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177        
                                                                                      97-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4R4K)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4R4K)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4R4K)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4R4K)

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