4R36 - JenaLib

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Title :   CRYSTAL STRUCTURE ANALYSIS OF LPXA, A UDP-N-ACETYLGLUCOSAMINE ACYLTRANSFERASE FROM BACTEROIDES FRAGILIS 9343

Authors :   A. Ngo, K. Fong, D. Cox, A. Fisher, X. Chen

Date :   14 Aug 14 (Deposition) - 06 May 15 (Release) - 03 Jun 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (3x)
Biol. Unit 2: B  (3x)

Keywords :   Left-Handed Beta Helix, Udp-N-Acetylglucosamine Acyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Ngo, K. T. Fong, D. L. Cox, X. Chen, A. J. Fisher
Structures Of Bacteroides Fragilis Uridine 5'-Diphosphate-N-Acetylglucosamine (Udp-Glcnac) Acyltransferase (Bflpxa).
Acta Crystallogr. , Sect. D V. 71 1068 2015
PubMed-ID: 25945572 | Reference-DOI: 10.1107/S1399004715003326

Molecule 1 - PUTATIVE ACYL-[ACYL-CARRIER-PROTEIN]--UDP-N- ACETYLGLUCOSAMINE O-ACYLTRANSFERASE
	Chains	:	A, B
	EC Number	:	2.3.1.129
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET-15B
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	LPXA, BF9343_0789
	Organism Scientific	:	BACTEROIDES FRAGILIS
	Organism Taxid	:	272559
	Strain	:	ATCC 25285 / NCTC 9343

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (3x)	:	A
Biological Unit 2 (3x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 8)

No.	Name	Count	Type	Full Name
1	ACT	2	Ligand/Ion	ACETATE ION
2	CA	3	Ligand/Ion	CALCIUM ION
3	PE5	1	Ligand/Ion	3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL
4	PG0	2	Ligand/Ion	2-(2-METHOXYETHOXY)ETHANOL

Biological Unit 1 (2, 6)

No.	Name	Count	Type	Full Name
1	ACT	3	Ligand/Ion	ACETATE ION
2	CA	-1	Ligand/Ion	CALCIUM ION
3	PE5	-1	Ligand/Ion	3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL
4	PG0	3	Ligand/Ion	2-(2-METHOXYETHOXY)ETHANOL

Biological Unit 2 (3, 9)

No.	Name	Count	Type	Full Name
1	ACT	3	Ligand/Ion	ACETATE ION
2	CA	-1	Ligand/Ion	CALCIUM ION
3	PE5	3	Ligand/Ion	3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL
4	PG0	3	Ligand/Ion	2-(2-METHOXYETHOXY)ETHANOL

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU A:69 , ASN A:107 , GLY A:125 , HOH A:1315	BINDING SITE FOR RESIDUE PG0 A 1001
2	AC2	SOFTWARE	GLN A:67 , HIS A:115 , ALA A:117 , ASN A:130 , HOH A:1103 , HOH A:1229	BINDING SITE FOR RESIDUE ACT A 1002
3	AC3	SOFTWARE	ASN A:89 , HOH A:1122 , HOH A:1336	BINDING SITE FOR RESIDUE CA A 1003
4	AC4	SOFTWARE	ASN A:29 , GLU A:75 , GLY A:100 , ARG A:101 , GLU B:230 , ALA B:231 , GLU B:232 , VAL B:233 , PRO B:234 , HOH B:1102 , HOH B:1169 , HOH B:1180 , HOH B:1239 , HOH B:1274	BINDING SITE FOR RESIDUE PE5 B 1001
5	AC5	SOFTWARE	ASP A:142 , ARG B:247 , ASN B:248 , GLU B:250 , HOH B:1279 , HOH B:1300	BINDING SITE FOR RESIDUE PG0 B 1002
6	AC6	SOFTWARE	GLN B:67 , HIS B:115 , ALA B:117 , ASN B:130 , HOH B:1107	BINDING SITE FOR RESIDUE ACT B 1003
7	AC7	SOFTWARE	HOH A:1182 , HOH A:1188 , HOH A:1255 , HOH B:1136 , HOH B:1189 , HOH B:1218 , HOH B:1223	BINDING SITE FOR RESIDUE CA B 1004
8	AC8	SOFTWARE	ASN B:89 , HOH B:1124	BINDING SITE FOR RESIDUE CA B 1005

(no "SS Bond" information available for 4R36)

Asymmetric Unit

No.	Residues
1	Glu A:183	-	Pro A:184
2	Glu B:183	-	Pro B:184

(no "SAP(SNP)/Variant" information available for 4R36)

(no "PROSITE Motif" information available for 4R36)

(no "Exon" information available for 4R36)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee....ee....ee....ee....ee....ee....ee...eee....ee....ee..............eeee....ee....ee........eeee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee.......eeee....eeeeehhhhhhhh..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r36 A   1 MISPLAYIHPEAKIGENVEIAPFVYIDRNVVIGDNNKIMANANILYGSRIGNGNTIFPGAVIGAIPQDLKFKGEESTAEIGDNNLIRENVTINRGTAAKGRTIVGNNNLLMEGVHVAHDALIGNGCIVGNSTKMAGEIIIDDNAIISANVLMHQFCRVGGYVMIQGGCRFSKDIPPYIIAGREPIAYSGINIIGLRRRGFSNEIIENIHNAYRIIYQSGLNTSDALTKVEAEVPASPEIEYIVDFIRNSERGIIR 255
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250

Chain B from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee....ee....ee....ee....ee....ee....ee...eee....ee....ee..............eeee....ee....ee........eeee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee.......eeee....eeeeehhhhhhhh..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r36 B   1 MISPLAYIHPEAKIGENVEIAPFVYIDRNVVIGDNNKIMANANILYGSRIGNGNTIFPGAVIGAIPQDLKFKGEESTAEIGDNNLIRENVTINRGTAAKGRTIVGNNNLLMEGVHVAHDALIGNGCIVGNSTKMAGEIIIDDNAIISANVLMHQFCRVGGYVMIQGGCRFSKDIPPYIIAGREPIAYSGINIIGLRRRGFSNEIIENIHNAYRIIYQSGLNTSDALTKVEAEVPASPEIEYIVDFIRNSERGIIR 255
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4R36)

(no "CATH Domain" information available for 4R36)

(no "Pfam Domain" information available for 4R36)

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	Cis Peptide Bonds
		Glu A:183 - Pro A:184	[ RasMol ]
		Glu B:183 - Pro B:184	[ RasMol ]

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		Biological Unit 2	[ Jena3D ]

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	Q5LH16_BACFN \| Q5LH16	:	4r37

Description

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Chains, Units

Ligands, Modified Residues, Ions (4, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

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SAPs(SNPs)/Variants (0, 0)

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Gene Ontology (7, 7)

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