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(-) Description

Title :  CRYSTAL STRUCTURE OF APC11 RING DOMAIN
 
Authors :  N. G. Brown, E. R. Watson, F. Weissmann, M. A. Jarvis, R. Vanderlinden, C. R. R. Grace, J. J. Frye, P. Dube, R. Qiao, G. Petzold, S. E. Cho, O. Alsh J. Bao, J. Zheng, A. Nourse, I. Kurinov, J. M. Peters, H. Stark, B. A. Sch
Date :  13 Aug 14  (Deposition) - 29 Oct 14  (Release) - 19 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  A,B  (2x)
Biol. Unit 6:  C,D  (2x)
Keywords :  Ring Domain, E3 Ubiquitin Ligase, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. G. Brown, E. R. Watson, F. Weissmann, M. A. Jarvis, R. Vanderlinden, C. R. Grace, J. J. Frye, R. Qiao, P. Dube, G. Petzold, S. E. Cho, O. Alsharif, J. Bao, I. F. Davidson, J. J. Zheng, A. Nourse, I. Kurinov, J. M. Peters, H. Stark, B. A. Schulman
Mechanism Of Polyubiquitination By Human Anaphase-Promoting Complex: Ring Repurposing For Ubiquitin Chain Assembly.
Mol. Cell V. 56 246 2014
PubMed-ID: 25306923  |  Reference-DOI: 10.1016/J.MOLCEL.2014.09.009

(-) Compounds

Molecule 1 - ANAPHASE-PROMOTING COMPLEX SUBUNIT 11
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RING DOMAIN (UNP RESIDUES 17-84)
    Gene: ANAPC11, HSPC214
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: APC11, CYCLOSOME SUBUNIT 11, HEPATOCELLULAR CARCINOMA- ASSOCIATED RING FINGER PROTEIN

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D
Biological Unit 5 (2x): AB  
Biological Unit 6 (2x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric Unit (1, 12)
No.NameCountTypeFull Name
1ZN12Ligand/IonZINC ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 5 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 6 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECYS A:23 , CYS A:26 , HIS A:56 , CYS A:59BINDING SITE FOR RESIDUE ZN A 101
02AC2SOFTWARECYS A:51 , HIS A:53 , CYS B:73 , CYS B:76BINDING SITE FOR RESIDUE ZN A 102
03AC3SOFTWARECYS A:34 , CYS A:37 , CYS A:44 , HIS A:58BINDING SITE FOR RESIDUE ZN A 103
04AC4SOFTWARECYS B:23 , CYS B:26 , HIS B:56 , CYS B:59BINDING SITE FOR RESIDUE ZN B 101
05AC5SOFTWARECYS A:73 , CYS A:76 , CYS B:51 , HIS B:53BINDING SITE FOR RESIDUE ZN B 102
06AC6SOFTWARECYS B:34 , CYS B:37 , CYS B:44 , HIS B:58BINDING SITE FOR RESIDUE ZN B 103
07AC7SOFTWARECYS C:23 , CYS C:26 , HIS C:56 , CYS C:59BINDING SITE FOR RESIDUE ZN C 101
08AC8SOFTWARECYS C:34 , CYS C:37 , CYS C:44 , HIS C:58BINDING SITE FOR RESIDUE ZN C 102
09AC9SOFTWARECYS C:51 , HIS C:53 , CYS D:73 , CYS D:76BINDING SITE FOR RESIDUE ZN C 103
10BC1SOFTWARECYS D:34 , CYS D:37 , CYS D:44 , HIS D:58BINDING SITE FOR RESIDUE ZN D 101
11BC2SOFTWARECYS D:23 , CYS D:26 , HIS D:56 , CYS D:59BINDING SITE FOR RESIDUE ZN D 102
12BC3SOFTWARECYS C:73 , CYS C:76 , CYS D:51 , HIS D:53BINDING SITE FOR RESIDUE ZN D 103

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4R2Y)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4R2Y)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4R2Y)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4R2Y)

(-) Exons   (0, 0)

(no "Exon" information available for 4R2Y)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:64
                                                                                               
               SCOP domains ---------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhh.......eee.....eeehhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                  4r2y A 21 ENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 84
                                    30        40        50        60        70        80    


Chain B from PDB  Type:PROTEIN  Length:59
                                                                                          
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ....................eee.....eeehhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  4r2y B 21 ENCGICRMAFNGCCPDCDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 84
                                    30      ||45        55        65        75         
                                           37|                                         
                                            43                                         


Chain C from PDB  Type:PROTEIN  Length:65
                                                                                                
               SCOP domains ----------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........................eee.....eeehhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------- Transcript
                  4r2y C 20 DENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 84
                                    29        39        49        59        69        79     


Chain D from PDB  Type:PROTEIN  Length:62
                                                                                             
               SCOP domains -------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------- Pfam domains
         Sec.struct. author .......................eee.....eeehhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------- Transcript
                  4r2y D 20 DENCGICRMAFNGCCPDCKDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 84
                                    29        42        52        62        72        82  
                                             38|                                          
                                              42
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4R2Y)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4R2Y)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4R2Y)

(-) Gene Ontology  (22, 22)

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  4r2y
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  APC11_HUMAN | Q9NYG5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        APC11_HUMAN | Q9NYG5: 2mt5 4ui9 5a31 5g04 5g05 5jg6 5khr 5khu 5l9t 5l9u 5lcw

(-) Related Entries Specified in the PDB File

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