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(-) Description

Title :  CRYSTAL STRUCTURE OF SUGAR TRANSPORTER OANT_3817 FROM OCHROBACTRUM ANTHROPI, TARGET EFI-510528, WITH BOUND GLUCOSE
 
Authors :  Y. Patskovsky, R. Toro, R. Bhosle, N. Al Obaidi, S. Chamala, J. D. Atton A. Scott Glenn, S. Chowdhury, J. Lafleur, R. D. Siedel, B. Hillerich, K. L. Whalen, J. A. Gerlt, S. C. Almo, Enzyme Function Initiative (E
Date :  11 Aug 14  (Deposition) - 27 Aug 14  (Release) - 26 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.87
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Sugar Transporter, Sbp-Type, Enzyme Function Initiative (Efi), Structural Genomics, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Patskovsky, R. Toro, R. Bhosle, N. Al Obaidi, S. Chamala, A. Scott Glenn, J. D. Attonito, S. Chowdhury, J. Lafleur, R. D. Siedel B. Hillerich, J. Love, K. L. Whalen, J. A. Gerlt, S. C. Almo
Crystal Structure Of Glucose Transporter Oant_3817 From Ochrobactrum Anthropi, Target Efi-510528
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - EXTRACELLULAR SOLUTE-BINDING PROTEIN FAMILY 1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 28-421
    Gene: OANT_3817
    Organism Scientific: OCHROBACTRUM ANTHROPI
    Organism Taxid: 439375
    Strain: ATCC 49188 / DSM 6882 / NCTC 12168

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1GLC2Ligand/IonALPHA-D-GLUCOSE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1GLC1Ligand/IonALPHA-D-GLUCOSE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1GLC1Ligand/IonALPHA-D-GLUCOSE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:38 , TRP A:39 , GLU A:44 , GLY A:70 , GLY A:71 , LEU A:95 , HIS A:146 , TRP A:252 , TRP A:272 , ASN A:303 , ASP A:305 , LYS A:340 , HIS A:380BINDING SITE FOR RESIDUE GLC A 501
2AC2SOFTWARETRP B:38 , TRP B:39 , GLU B:44 , GLY B:70 , GLY B:71 , LEU B:95 , HIS B:146 , TRP B:252 , TRP B:272 , ASN B:303 , ASP B:305 , LYS B:340 , HIS B:380BINDING SITE FOR RESIDUE GLC B 501

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:290 -A:357
2B:290 -B:357

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4R2B)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4R2B)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4R2B)

(-) Exons   (0, 0)

(no "Exon" information available for 4R2B)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:395
                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee...hhhhhhhhhhhhhhhhhh.eeeeeee..hhhhhhhhhhhhhhhhh.....eeeeehhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhee..ee..ee.eeee..eeeeehhhhhhh......hhhhhhhhhhhhhhh..eee....hhhhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..eeeee..hhhhhhhhhh.......eeeee.......eeee.eeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee..........hhhhhhhhhhhhhhhhhh.eee........hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r2b A  27 MQDKQNVEVLHWWTAGGEAAALDVLKKDLEKKGISWTDMPVAGGGGTEAMTVLRARVTAGNAPTAVQMLGFDIRDWAEQGALGNLDEIANKEGWEKVIPAPLQEFAKYDGHWIAAPVNVHSTNWMWINKAALDKAGGKEPTNWDELIALLDKFKEQGITPIAHGGQPWQDATIFDAVVLSFGTDFYKKAFIDLDPETLGSDTMKQAFDRMTKLRSYVDDNFSGRDWNLASAMVIEGKAGLQFMGDWAKGEFVKAGKKPGEDFVCMRYPGTQGAITFNSDMFAMFKVSEDKVPAQLEMASAIESPTFQSAFNVVKGSAPARTDVPDTDFDACGKKAIADEKEASEKGTMLGSMAHGYANPAAVKNAIYDVVTRQFNGQLSSEDAVKELVSAVEGAK 421
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416     


Chain B from PDB  Type:PROTEIN  Length:395
                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee...hhhhhhhhhhhhhhhhhh.eeeeeee..hhhhhhhhhhhhhhhhh.....eeeeehhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhee..ee..ee.eeee..eeeeehhhhhhh......hhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..eeeee..hhhhhhhhhh.......eeeee.......eeee.eeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee..........hhhhhhhhhhhhhhhhhh.eee........hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r2b B  27 MQDKQNVEVLHWWTAGGEAAALDVLKKDLEKKGISWTDMPVAGGGGTEAMTVLRARVTAGNAPTAVQMLGFDIRDWAEQGALGNLDEIANKEGWEKVIPAPLQEFAKYDGHWIAAPVNVHSTNWMWINKAALDKAGGKEPTNWDELIALLDKFKEQGITPIAHGGQPWQDATIFDAVVLSFGTDFYKKAFIDLDPETLGSDTMKQAFDRMTKLRSYVDDNFSGRDWNLASAMVIEGKAGLQFMGDWAKGEFVKAGKKPGEDFVCMRYPGTQGAITFNSDMFAMFKVSEDKVPAQLEMASAIESPTFQSAFNVVKGSAPARTDVPDTDFDACGKKAIADEKEASEKGTMLGSMAHGYANPAAVKNAIYDVVTRQFNGQLSSEDAVKELVSAVEGAK 421
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416
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 Classification and Annotation

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(no "SCOP Domain" information available for 4R2B)

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(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4R2B)

(-) Gene Ontology  (2, 2)

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