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(-) Description

Title :  CRYSTAL STRUCTURE OF MEDICAGO TRUNCATULA CINNAMOYL-COA REDUCTASE
 
Authors :  J. P. Noel, E. K. Bomati, G. V. Louie, M. E. Bowman
Date :  07 Aug 14  (Deposition) - 01 Oct 14  (Release) - 12 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.18
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Cinnamoyl-Coa Reductase, Short-Chain Dehydrogenase/Reductase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Pan, R. Zhou, G. V. Louie, J. K. Muhlemann, E. K. Bomati, M. E. Bowman, N. Dudareva, R. A. Dixon, J. P. Noel, X. Wang
Structural Studies Of Cinnamoyl-Coa Reductase And Cinnamyl-Alcohol Dehydrogenase, Key Enzymes Of Monolignol Biosynthesis.
Plant Cell V. 26 3709 2014
PubMed-ID: 25217505  |  Reference-DOI: 10.1105/TPC.114.127399

(-) Compounds

Molecule 1 - CINNAMOYL COA REDUCTASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PHIS8
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: MTCCR2, MTR_4G006940
    Organism Common: BARREL MEDIC
    Organism Scientific: MEDICAGO TRUNCATULA
    Organism Taxid: 3880

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:197 , VAL A:210 , ARG A:248 , HOH A:504BINDING SITE FOR RESIDUE ACT A 401
2AC2SOFTWAREHIS B:197 , VAL B:210 , ARG B:248 , HOH B:567BINDING SITE FOR RESIDUE ACT B 401
3AC3SOFTWARETHR B:213 , GLN B:214 , ALA B:245 , TYR B:279 , PHE B:281 , HOH B:535BINDING SITE FOR RESIDUE ACT B 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4R1U)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4R1U)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4R1U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4R1U)

(-) Exons   (0, 0)

(no "Exon" information available for 4R1U)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:308
                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhh..eeeeee....hhhhh......hhhhheeeee....hhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhhhhhh..eeeee.hhhhh..........ee......hhhhhhhh.hhhhhhhhhhhhhhhhhhhhh...eeeeee.eee........hhhhhhhhhhhh....ee...eeeeeehhhhhhhhhhhhhh....eeeee..eeeehhhhhhhhhhhh.......ee...........ee.hhhhhhh.....hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r1u A   1 DQTVCVTGAGGFIASWLVKLLLERGYTVRGTVRNPEDPKNGHLKELEGARERLTLHKVDLLDLQSIQSVVHGCHGVFHTAPDEMLEPAVNGTKNVIIASAEAKVRRVVFTSSIGTVYMDPNTSRDVVVDESYWSDLEHCKNTKNWYCYGKTVAEQSAWDIAKENQVDLVVVNPVVVLGPLLQPTINASTIHILKYLNGAAKTYVNATQSYVHVKDVALAHLLVYETNSASGRYICCETALHRGEVVEILAKYFPEYPLPTKCSDEKNPRVKPYKFSNQKLKDLGLEFTPVKQCLYDTVRSLQEKGHLP 314
                                    10        20        30        40        50        60        70        80|       96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306        
                                                                                                          80|                                                                                                                                                                                                                                   
                                                                                                           87                                                                                                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:309
                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhh..eeeeee....hhhhhhhhhh.hhhhheeeee....hhhhhhhhhh...eeee....hhhhhhhhhhhhhhhhhh...eeeee.hhhhh..........ee......hhhhhhhh.hhhhhhhhhhhhhhhhhhhhh...eeeeee.eee........hhhhhhhhhhhh....ee...eeeeeehhhhhhhhhhhhhh....eeeee...eeehhhhhhhhhhhh.......ee...........ee.hhhhhh......hhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r1u B   1 DQTVCVTGAGGFIASWLVKLLLERGYTVRGTVRNPEDPKNGHLKELEGARERLTLHKVDLLDLQSIQSVVHGCHGVFHTASMLEPAVNGTKNVIIASAEAKVRRVVFTSSIGTVYMDPNTSRDVVVDESYWSDLEHCKNTKNWYCYGKTVAEQSAWDIAKENQVDLVVVNPVVVLGPLLQPTINASTIHILKYLNGAAKTYVNATQSYVHVKDVALAHLLVYETNSASGRYICCETALHRGEVVEILAKYFPEYPLPTKCSDEKNPRVKPYKFSNQKLKDLGLEFTPVKQCLYDTVRSLQEKGHLPIPP 317
                                    10        20        30        40        50        60        70        80||      98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308         
                                                                                                           81|                                                                                                                                                                                                                                   
                                                                                                            90
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4R1U)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4R1U)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4R1U)

(-) Gene Ontology  (2, 2)

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(-) Related Entries Specified in the PDB File

4r1s PETUNIA HYBRIDA CINNAMOYL-COA REDUCTASE / NADP+ COMPLEX
4r1t PETUNIA HYBRIDA CINNAMOYL-COA REDUCTASE (APO FORM)