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(-) Description

Title :  CRYSTAL STRUCTURE OF FVO STRAIN PLASMODIUM FALCIPARUM AMA1
 
Authors :  S. S. Lim, R. S. Norton, S. Mcgowan
Date :  04 Aug 14  (Deposition) - 14 Jan 15  (Release) - 14 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Pan Fold, Erythrocyte Invasion By Merozoites, Ron2, Moving Junction Complex, Cell Invasion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. S. Lim, W. Yang, B. Krishnarjuna, K. Kannan Sivaraman, I. R. Chandrashekaran, I. Kass, C. A. Macraild, S. M. Devine, C. O. Debono, R. F. Anders, M. J. Scanlon, P. J. Scammells, R. S. Norton, S. Mcgowan
Structure And Dynamics Of Apical Membrane Antigen 1 From Plasmodium Falciparum Fvo.
Biochemistry V. 53 7310 2014
PubMed-ID: 25360546  |  Reference-DOI: 10.1021/BI5012089

(-) Compounds

Molecule 1 - APICAL MEMBRANE ANTIGEN 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 DE3
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 104-438
    Gene: AMA-1, PF83
    Organism Scientific: PLASMODIUM FALCIPARUM FCR-3/GAMBIA
    Organism Taxid: 5838
    Strain: ISOLATE FCR-3 / GAMBIA
    Synonym: MEROZOITE SURFACE ANTIGEN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4R1A)

(-) Sites  (0, 0)

(no "Site" information available for 4R1A)

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:149 -A:302
2A:217 -A:247
3A:320 -A:418
4A:337 -A:409

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Asn A:187 -Pro A:188
2Ser A:191 -Pro A:192

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4R1A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4R1A)

(-) Exons   (0, 0)

(no "Exon" information available for 4R1A)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:265
                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh..hhhhhh.........eeee....eeee......ee.eeeee.............................eehhhhhhhh.........hhhhhhhhhhhh.......eeee....eeee..........eeeee.hhhh.eeee......hhhhhh...eeeeeeeeeee..eeee....eeee..hhhhhhhhhhhhh...............eeeee....eeeee.....eeeeeeeeeeee.......ee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r1a A 108 NPWTEYMAKYDIEEVHGSGIRVDLGEDAEVAGTQYRLPSGKCPVFGKGIIIESNTTFLKPVATLKDGGFAFPPTNPLISPMTLNGMRDFYKNNEYVKNLDELTLCSRHAGNMNNYKYPAVYDYNDKKCHILYIAAQENFCFRPAKDKLFENYTYLSKNVVDNWEEVCPRKNLENAKFGLWVDGNCEDIPHVNEFSANDLFECNKLVFELSASDQPRYKSHGKGYNWGNYNRETQKCEIFNVKPTCLINNSSYIATTALSHPIEVE 438
                                   117       127       137       147       157 ||    168  ||   182       192       202       212       222  ||   239       249       275       285       295       305       315       325       335       345    || 393       403       413       423       433     
                                                                             159|       171|                                              225|                     257|                                                                         350|                                                 
                                                                              161        176                                               233                      274                                                                          389
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4R1A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4R1A)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4R1A)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asn A:187 - Pro A:188   [ RasMol ]  
    Ser A:191 - Pro A:192   [ RasMol ]  
 

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  4r1a
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  AMA1_PLAFG | P50490
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 4R1A)

(-) Related Entries Specified in the PDB File

4r19 4r1b 4r1c