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(-) Description

Title :  HEXAGONAL FORM OF PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE FROM MYCOBACTERIUM TUBERCULOSIS
 
Authors :  V. I. Timofeev, E. A. Smirnova, L. A. Chupova, R. S. Esipov, I. P. Kuranov
Date :  01 Aug 14  (Deposition) - 13 Aug 14  (Release) - 13 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,C,E,G,I,K
Keywords :  Nucleotidyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. I. Timofeev, E. A. Smirnova, L. A. Chupova, R. S. Esipov, I. P. Kuranova
Hexagonal Form Of Phosphopantetheine Adenylyltransferase From Mycobacterium Tuberculosis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE
    Chains: A, C, E, G, I, K
    EC Number: 2.7.7.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: COAD, HKBT1_3114
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS BT1
    Organism Taxid: 1010836
    Synonym: DEPHOSPHO-COA PYROPHOSPHORYLASE, PANTETHEINE-PHOSPHATE ADENYLYLTRANSFERASE

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ACEGIK

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric/Biological Unit (1, 8)
No.NameCountTypeFull Name
1SO48Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:17 , ARG A:90 , SER A:126 , SER A:127 , HOH A:306 , HOH A:315 , HOH A:327BINDING SITE FOR RESIDUE SO4 A 201
2AC2SOFTWAREHIS C:17 , ARG C:90 , SER C:126 , SER C:127 , HOH C:310 , HOH C:326 , HOH C:339BINDING SITE FOR RESIDUE SO4 C 201
3AC3SOFTWAREPRO C:120 , ARG C:121 , ARG G:121 , SO4 G:202 , HOH I:336BINDING SITE FOR RESIDUE SO4 C 202
4AC4SOFTWAREHIS E:17 , ARG E:90 , SER E:126 , SER E:127 , HOH E:314 , HOH E:317 , HOH E:332BINDING SITE FOR RESIDUE SO4 E 201
5AC5SOFTWAREHIS G:17 , ARG G:90 , SER G:126 , SER G:127 , HOH G:313 , HOH G:326BINDING SITE FOR RESIDUE SO4 G 201
6AC6SOFTWAREARG C:121 , SO4 C:202 , PRO G:120 , ARG G:121 , HOH G:322 , HOH G:335BINDING SITE FOR RESIDUE SO4 G 202
7AC7SOFTWAREHIS I:17 , ARG I:90 , SER I:126 , SER I:127 , HOH I:319BINDING SITE FOR RESIDUE SO4 I 201
8AC8SOFTWAREHIS K:17 , ARG K:90 , SER K:126 , SER K:127 , HOH K:304 , HOH K:333BINDING SITE FOR RESIDUE SO4 K 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4R0N)

(-) Cis Peptide Bonds  (11, 11)

Asymmetric/Biological Unit
No.Residues
1Asp A:11 -Pro A:12
2Pro A:39 -Ala A:40
3Asp C:11 -Pro C:12
4Thr C:91 -Gly C:92
5Asp E:11 -Pro E:12
6Asp G:11 -Pro G:12
7Thr G:42 -Gly G:43
8Asp I:11 -Pro I:12
9Thr I:42 -Gly I:43
10Asp K:11 -Pro K:12
11Thr K:42 -Gly K:43

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4R0N)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4R0N)

(-) Exons   (0, 0)

(no "Exon" information available for 4R0N)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:156
                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhhhhhhhhhh.eeeeeee.........hhhhhhhhhhhhh.....eeeeee..hhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhh.eeeeee.hhhhh..hhhhhhhhhh....hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4r0n A   2 TGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNPAKTGMFDLDERIAMVKESTTHLPNLRVQVGHGLVVDFVRSCGMTAIVKGLRTGTDFEYELQMAQMNKHIAGVDTFFVATAPRYSFVSSSLAKEVAMLGGDVSELLPEPVNRRLRDRLN 157
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151      


Chain C from PDB  Type:PROTEIN  Length:156
                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhhhhhhhhhh.eeeeeee.........hhhhhhhhhhhhh.....eeeeee..hhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhh.eeeeee.hhhhh..hhhhhhhhhhh...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4r0n C   2 TGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNPAKTGMFDLDERIAMVKESTTHLPNLRVQVGHGLVVDFVRSCGMTAIVKGLRTGTDFEYELQMAQMNKHIAGVDTFFVATAPRYSFVSSSLAKEVAMLGGDVSELLPEPVNRRLRDRLN 157
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151      


Chain E from PDB  Type:PROTEIN  Length:156
                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhhhhhhhhhh.eeeeeee.........hhhhhhhhhhhh......eeeeee..hhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhh.eeeeee.hhhhh..hhhhhhhhhh....hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4r0n E   2 TGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNPAKTGMFDLDERIAMVKESTTHLPNLRVQVGHGLVVDFVRSCGMTAIVKGLRTGTDFEYELQMAQMNKHIAGVDTFFVATAPRYSFVSSSLAKEVAMLGGDVSELLPEPVNRRLRDRLN 157
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151      


Chain G from PDB  Type:PROTEIN  Length:156
                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhhhhhhhhhh.eeeeee..........hhhhhhhhhhhhh.....eeeee...hhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhh.eeeeee.hhhhh..hhhhhhhhhhh...hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4r0n G   2 TGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNPAKTGMFDLDERIAMVKESTTHLPNLRVQVGHGLVVDFVRSCGMTAIVKGLRTGTDFEYELQMAQMNKHIAGVDTFFVATAPRYSFVSSSLAKEVAMLGGDVSELLPEPVNRRLRDRLN 157
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151      


Chain I from PDB  Type:PROTEIN  Length:156
                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhhhhhhhhhh.eeeeeee.........hhhhhhhhhhhhh.....eeeeee..hhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhh.eeeeee.hhhhh..hhhhhhhhhhh...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4r0n I   2 TGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNPAKTGMFDLDERIAMVKESTTHLPNLRVQVGHGLVVDFVRSCGMTAIVKGLRTGTDFEYELQMAQMNKHIAGVDTFFVATAPRYSFVSSSLAKEVAMLGGDVSELLPEPVNRRLRDRLN 157
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151      


Chain K from PDB  Type:PROTEIN  Length:156
                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhhhhhhhhhh.eeeeee..........hhhhhhhhhhhhh.....eeeee...hhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhh.eeeeee.hhhhh..hhhhhhhhhhh...hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4r0n K   2 TGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNPAKTGMFDLDERIAMVKESTTHLPNLRVQVGHGLVVDFVRSCGMTAIVKGLRTGTDFEYELQMAQMNKHIAGVDTFFVATAPRYSFVSSSLAKEVAMLGGDVSELLPEPVNRRLRDRLN 157
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4R0N)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4R0N)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4R0N)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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    Pro A:39 - Ala A:40   [ RasMol ]  
    Thr C:91 - Gly C:92   [ RasMol ]  
    Thr G:42 - Gly G:43   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        COAD_MYCTU | P9WPA5: 1tfu 3lcj 3nba 3nbk 3pnb 3rba 3rff 3rhs 3uc5 4e1a

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4R0N)