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(-) Description

Title :  STRUCTURE OF DIMERIC HUMAN GLYCODELIN
 
Authors :  A. Schiefner, A. Skerra
Date :  30 Jul 14  (Deposition) - 10 Dec 14  (Release) - 18 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Amniotic Fluid, Cumulus Oophorus, Endometrium, Fallopian Tube, Fertilization, Glycan Presentation, Human Lipocalin, Lipid Binding Protein, Seminal Fluid, Sperm-Egg Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Schiefner, F. Rodewald, I. Neumaier, A. Skerra
The Dimeric Crystal Structure Of The Human Fertility Lipocalin Glycodelin Reveals A Protein Scaffold For The Presentation Of Complex Glycans.
Biochem. J. V. 466 95 2015
PubMed-ID: 25422905  |  Reference-DOI: 10.1042/BJ20141003

(-) Compounds

Molecule 1 - GLYCODELIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PASK75-HIS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 20-180
    Gene: PAEP
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: GD, PLACENTAL PROTEIN 14, PP14, PREGNANCY-ASSOCIATED ENDOMETRIAL ALPHA-2 GLOBULIN, PAEG, PEG, PROGESTAGEN-ASSOCIATED ENDOMETRIAL PROTEIN, PROGESTERONE-ASSOCIATED ENDOMETRIAL PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:66 -A:160
2A:106 -A:119

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:153
                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhee.eeeeeee.hhhhh.........eeeeeee.....eeeeeeee....eeeeeeeeee.....eeeeee..eeeeeeeee....eeeeeeee......eeeeeeee.....hhhhhhhhhhhhh.......eeee........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r0b A   8 QDLELPKLAGTWHSMAMATNEISLMATLKAPLRVHITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNFLFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPC 160
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157
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(-) Gene Ontology  (9, 9)

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