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(-) Description

Title :  CRYSTAL STRUCTURE OF A CRISPR RNA-GUIDED SURVEILLANCE COMPLEX, CASCADE, BOUND TO A SSDNA TARGET
 
Authors :  S. Mulepati, S. Bailey
Date :  26 Jul 14  (Deposition) - 03 Sep 14  (Release) - 01 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.03
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M
Keywords :  Crispr-Associated, Bacterial Immunity, Cas3, Immune System-Dna-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Mulepati, A. Heroux, S. Bailey
Structural Biology. Crystal Structure Of A Crispr Rna-Guide Surveillance Complex Bound To A Ssdna Target.
Science V. 345 1479 2014
PubMed-ID: 25123481  |  Reference-DOI: 10.1126/SCIENCE.1256996

(-) Compounds

Molecule 1 - CRISPR SYSTEM CASCADE SUBUNIT CASA
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CASA, CSE1, YGCL, B2760, JW2730
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K12
    Synonym: CRISPR TYPE I-E/ECOLI-ASSOCIATED PROTEIN CASA/CSE1, CRISPR- ASSOCIATED PROTEIN CASA/CSE1
 
Molecule 2 - CRISPR SYSTEM CASCADE SUBUNIT CASB
    Chains: B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CASB, CSE2, YGCK, B2759, JW2729
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K12
 
Molecule 3 - CRISPR SYSTEM CASCADE SUBUNIT CASC
    Chains: D, E, F, G, H, I
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CASC, CAS4, CSE4, YGCJ, B2758, JW2728
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K12
 
Molecule 4 - CRISPR SYSTEM CASCADE SUBUNIT CASD
    Chains: J
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CASD, CAS5, YGCI, B2757, JW5844
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K12
 
Molecule 5 - CRISPR SYSTEM CASCADE SUBUNIT CASE
    Chains: K
    EC Number: 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CASE, CAS6E, YGCH, B2756, JW2726
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K12
    Synonym: CASE ENDORNASE, CRRNA ENDONUCLEASE
 
Molecule 6 - RNA (55-MER)
    Chains: L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Other Details: CRRNA
 
Molecule 7 - DNA (33-MER)
    Chains: M
    Engineered: YES
    Organism Scientific: ENTEROBACTERIA PHAGE LAMBDA
    Organism Taxid: 10710
    Other Details: TARGET DNA
    Other Details - Source: THIS SEQUENCE IS FROM LAMBDA PHAGE
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678910111213
Asymmetric/Biological Unit : ABCDEFGHIJKLM

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1ZN1Ligand/IonZINC ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:140 , CYS A:143 , CYS A:250 , CYS A:253BINDING SITE FOR RESIDUE ZN A 601

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:143 -A:253
2A:143 -A:250

(-) Cis Peptide Bonds  (26, 26)

Asymmetric/Biological Unit
No.Residues
1Asn A:109 -Asp A:110
2Gly A:159 -Gly A:160
3Gly A:165 -Leu A:166
4Arg A:167 -Gly A:168
5Thr A:205 -Glu A:206
6Ser A:217 -Asn A:218
7Gly A:246 -Ile A:247
8Gly B:68 -Lys B:69
9Trp B:140 -Gly B:141
10Gly C:68 -Lys C:69
11Phe D:31 -Gly D:32
12Val D:100 -Asp D:101
13Ala E:265 -Lys E:266
14Val E:337 -Asp E:338
15Phe F:31 -Gly F:32
16Ala F:265 -Lys F:266
17Ala F:342 -Gln F:343
18Phe G:31 -Gly G:32
19Ala G:265 -Lys G:266
20Phe H:31 -Gly H:32
21Ala H:265 -Lys H:266
22Phe I:31 -Gly I:32
23Ala I:265 -Lys I:266
24Gly I:324 -Leu I:325
25Ala J:126 -Thr J:127
26Glu J:175 -Pro J:176

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QYZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QYZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4QYZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:468
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeeeee......eeeehhhhhhh...ee....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh..hhhhhhhhhhhhhhhh......................hhhhhh...hhhhhhhhhhhhhhh..................eeee...hhhhhhhhh..hhhhhhhhh....................eee.hhhhhhhhhh....eee........................eee....eee.........eeeee....eeeee.......hhhhhhhhhhh....ee..hhhhhhhhhhh....eeeeeeee...eeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4qyz A   1 MNLLIDNWIPVRPRNGGKVQIINLQSLYCSRDQWRLSLPRDDMELAALALLVCIGQIIAPAKDDVEFRHRIMNPLTEDEFQQLIAPWIDMFYLNHAEHPFMQTKGVKANDVTPMEKLLAEALCGGCTAIALFNQANQAPGFGGGFKSGLRGGTPVTTFVRGIDLRSTVLLNVLTLPRLQKQFPNESHTENQPTWIKPIKSNESIPASSIGFVRGLFWQPAHIELCDPIGIGKCSCCGQESNLRYTGFLKEKFTFTVNGLWPHPHSPCLVTVKKGEVEEKFLAFTTSAPSWTQISRVVVDKINGNRVAAVVNQFRNIAPQSPLELIMGGYRLERRHDVLMFNQGWQQYGNVINEIVTVGLGYKTALRKALYTFAEGFKNKDFKGAGVSVHETAERHFYRQSELLIPDVLANVNFSQADEVIADLRDKLHQLCEMLFNQSVAPYAHHPKLISTLALARATLYKHLRELKP 495
                                    10        20        30        40        50        60        70        80        90       100       110       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317||     331       341       351|      367       377       387       397       407       417       427       437       447       457       467       477       487        
                                                                                                                                                119|                                                                                                                                                                                  318|                         351|                                                                                                                                         
                                                                                                                                                 137                                                                                                                                                                                   323                          358                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh......ee....hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.eehhhhhhhhhhh..hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4qyz B   3 DEIDAMALYRAWQQLDNGSCAQIRRVSEPDELRDIPAFYRLVQPFGWENPRHQQALLRMVFCLSAGKNVIRHQTGISLGRALANSGRINERRIFQLIRADRTADMVQLRRLLTHAEPVLDWPLMARMLTWWGKRERQQLLEDFVLTTNKN 159
                                    12        22        32        42        52        62        72  ||    89        99       109       119       129       139       149       159
                                                                                                   75|                                                                            
                                                                                                    83                                                                            


Chain C from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh......ee....hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.eehhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4qyz C   3 DEIDAMALYRAWQQLDNGSCAQIRRVSEPDELRDIPAFYRLVQPFGWENPRHQQALLRMVFCLSAGKNVIRHQTGISLGRALANSGRINERRIFQLIRADRTADMVQLRRLLTHAEPVLDWPLMARMLTWWGKRERQQLLEDFVLTTNKN 159
                                    12        22        32        42        52        62        72  ||    89        99       109       119       129       139       149       159
                                                                                                   75|                                                                            
                                                                                                    83                                                                            


Chain D from PDB  Type:PROTEIN  Length:340
                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeee..............eee....eeeeehhhhhhhhhhhhhhhhhhh....eeeeehhhhhhhhhhhhh...hhhhhhhhhhhhhh.........eeeeeeeehhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.....hhhhhh......eee..eee................eeeeeeeeeehhhhhhhh...hhhhhhhhhhhhhhhhhhh................eeeeeee.....hhhhhh........hhhhhhhhhhhhhhhhhhhh....eeeee...........hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qyz D   1 MSNFINIHVLISHSPSCLNRDDMNMQKDAIFGGKRRVRISSQSLKRAMRKSGYYAQNIGESSLRTIHLAQLRDVLRQKLGERFDQKIIDKTLALLSGKSVDEAEKISADAVTPWVVGEIAWFCEQVAKAEADNLDDKKLLKVLKEDIAAIRVNLQQGVDIALSGRMATSGMMTELGKVDGAMSIAHAITTHQVDSDIDGTQEFSSGVFYRYANINLAQLQENLGGASREQALEIATHVVHMLATEVPGAKQRTYAAFNPADMVMVNFSDMPLSMANAFEKAVKAKDGFLQPSIQAFNQYWDRVANGYGLNGAAAQFSLSDVDPKQMPTLEQLKSWVRNNG 361
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       216       226       236       246       256       266       276       286       296       306       316       326       336  ||   351       361
                                                                                                                                                                                                                               198|                                                                                                                         339|                
                                                                                                                                                                                                                                215                                                                                                                          345                


Chain E from PDB  Type:PROTEIN  Length:361
                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeeee..........eeee....eeeeehhhhhhhhhhhhhhhhhhh....eeeeehhhhhhhhhhhhh...hhhhhhhhhhhhhh.........eeeeeeeehhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................eee..eee......eeeeeee..........eeeeeeeeeeeeeeeeeeehhhhhhhh...hhhhhhhhhhhhhhhhhhh....hhhhhh....eeeeeeeee.....hhhhhh........hhhhhhhhhhhhhhhhhhhh.....eeeee...........eee.hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qyz E   1 MSNFINIHVLISHSPSCLNRDDMNMQKDAIFGGKRRVRISSQSLKRAMRKSGYYAQNIGESSLRTIHLAQLRDVLRQKLGERFDQKIIDKTLALLSGKSVDEAEKISADAVTPWVVGEIAWFCEQVAKAEADNLDDKKLLKVLKEDIAAIRVNLQQGVDIALSGRMATSGMMTELGKVDGAMSIAHAITTHQVDSDIDWFTAVDDLQEQGSAHLGTQEFSSGVFYRYANINLAQLQENLGGASREQALEIATHVVHMLATEVPGAKQRTYAAFNPADMVMVNFSDMPLSMANAFEKAVKAKDGFLQPSIQAFNQYWDRVANGYGLNGAAAQFSLSDVDPITAQVKQMPTLEQLKSWVRNNG 361
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360 


Chain F from PDB  Type:PROTEIN  Length:362
                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeeee...........eeee..eeeeeehhhhhhhhhhhhhhhhhhh....eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeeeeeehhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................eeeeeeee......eeeeeeee.......eeeeeeeeeeeeeeeeeeeeehhhhhhhh...hhhhhhhhhhhhhhhhhhh....hhhhhh....eeeeeeeee....hhhhhhh........hhhhhhhhhhhhhhhhhhhh.....eeeee...........eee.hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qyz F   1 MSNFINIHVLISHSPSCLNRDDMNMQKDAIFGGKRRVRISSQSLKRAMRKSGYYAQNIGESSLRTIHLAQLRDVLRQKLGERFDQKIIDKTLALLSGKSVDEAEKISADAVTPWVVGEIAWFCEQVAKAEADNLDDKKLLKVLKEDIAAIRVNLQQGVDIALSGRMATSGMMTELGKVDGAMSIAHAITTHQVDSDIDWFTAVDDLQEQGSAHLGTQEFSSGVFYRYANINLAQLQENLGGASREQALEIATHVVHMLATEVPGAKQRTYAAFNPADMVMVNFSDMPLSMANAFEKAVKAKDGFLQPSIQAFNQYWDRVANGYGLNGAAAQFSLSDVDPITAQVKQMPTLEQLKSWVRNNGE 362
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360  


Chain G from PDB  Type:PROTEIN  Length:360
                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeeeeeee.............ee..ee..eehhhhhhhhhhhhhhhhhhh....eeeeehhhhhhhhhhhhh...hhhhhhhhhhhhhh.........eeeeeeeehhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.................eeeeeeee......eeeeeeee.......eeeeeeeeeeeeeeeeeeeeehhhhhhhh...hhhhhhhhhhhhhhhhhhh....hhhhhh......eeeeeee....hhhhhhh........hhhhhhhhhhhhhhhhhhhh.....eeeee........ee..hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4qyz G   1 MSNFINIHVLISHSPSCLNRDDMNMQKDAIFGGKRRVRISSQSLKRAMRKSGYYAQNIGESSLRTIHLAQLRDVLRQKLGERFDQKIIDKTLALLSGKSVDEAEKISADAVTPWVVGEIAWFCEQVAKAEADNLDDKKLLKVLKEDIAAIRVNLQQGVDIALSGRMATSGMMTELGKVDGAMSIAHAITTHQVDSDIDWFTAVDDLQEQGSAHLGTQEFSSGVFYRYANINLAQLQENLGGASREQALEIATHVVHMLATEVPGAKQRTYAAFNPADMVMVNFSDMPLSMANAFEKAVKAKDGFLQPSIQAFNQYWDRVANGYGLNGAAAQFSLSDVDPQVKQMPTLEQLKSWVRNNGEA 363
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       343       353       363
                                                                                                                                                                                                                                                                                                                                                                            339|                    
                                                                                                                                                                                                                                                                                                                                                                             343                    


Chain H from PDB  Type:PROTEIN  Length:359
                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeeee..........eeeee..eeeeeehhhhhhhhhhhhhhhhhhh....eeeeehhhhhhhhhhhhh...hhhhhhhhhhhhhh.........eeeeeeeehhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhhhh......hhhhhh.....eeeeeeee......eeeeeee..........eeeeeeeeeeeeeeeeeeehhhhhhhh...hhhhhhhhhhhhhhhhhhh....hhhhhh....eeeeeeeee....hhhhhhh........hhhhhhhhhhhhhhhhhhhh.....eeeee........eee.hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qyz H   1 MSNFINIHVLISHSPSCLNRDDMNMQKDAIFGGKRRVRISSQSLKRAMRKSGYYAQNIGESSLRTIHLAQLRDVLRQKLGERFDQKIIDKTLALLSGKSVDEAEKISADAVTPWVVGEIAWFCEQVAKAEADNLDDKKLLKVLKEDIAAIRVNLQQGVDIALSGRMATSGMMTELGKVDGAMSIAHAITTHQVDSDIDWFTAVDDLQEQGSAHLGTQEFSSGVFYRYANINLAQLQENLGGASREQALEIATHVVHMLATEVPGAKQRTYAAFNPADMVMVNFSDMPLSMANAFEKAVKAKDGFLQPSIQAFNQYWDRVANGYGLNGAAAQFSLSDITAQVKQMPTLEQLKSWVRNNGE 362
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330     ||343       353         
                                                                                                                                                                                                                                                                                                                                                                         336|                      
                                                                                                                                                                                                                                                                                                                                                                          340                      


Chain I from PDB  Type:PROTEIN  Length:256
                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeeee...........eeee..eeeeeehhhhhhhhhhhhhhhhhhh...hhhhhhhh.....eee..eee......eeeeeeee.......eeeeeeeeeeeeeeeeeeeeehhhhhhhh...hhhhhhhhhhhhhhhhhhh....hhhhhh......eeeeeee....hhhhhhh........hhhhhhhhhhhhhhhhhhhh.....eeeee...........eee.hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qyz I   1 MSNFINIHVLISHSPSCLNRDDMNMQKDAIFGGKRRVRISSQSLKRAMRKSGYYAQNIGEQGVDIALSGRMDGAMSIAHAITTHQVDSDIDWFTAVDDLQEQGSAHLGTQEFSSGVFYRYANINLAQLQENLGGASREQALEIATHVVHMLATEVPGAKQRTYAAFNPADMVMVNFSDMPLSMANAFEKAVKAKDGFLQPSIQAFNQYWDRVANGYGLNGAAAQFSLSDVDPITAQVKQMPTLEQLKSWVRNNGEA 363
                                    10        20        30        40        50        60|      165||     187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357      
                                                                                      60|       166|                                                                                                                                                                                        
                                                                                      156        179                                                                                                                                                                                        


Chain J from PDB  Type:PROTEIN  Length:195
                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeee.......ee......hhhhhhhhhhhhh.....hhhhhhhhhhheeeeeee..........eeeeeeee...eeeeeeeeeeeeeeeeee......hhhhhhhhhhh.........................hhhhhhh......eee.....eeeee..............eeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qyz J   1 MRSYLILRLAGPMQAWGQPTGTRPTGRFPTRSGLLGLLGACLGIQRDDTSSLQALSESVQFAVRCDELILRRVSVTGLRDYHTVLIQTWREYLCDASFTVALWLTPHATMVISELEKAVLKPRYTPYLGRRSCPLTHPLFLGTCQPQKALLNYEPVGGDIYSEESVHLKFTARDEPMITLPRQFASREWYVIKGG 219
                                    10        20|       32        42        52        62        72|       84    || 108       118       128       138       148       158    || 171       181     ||194       204       214     
                                              20|                                               72|            89|                                                        163|                 187|                            
                                               23                                                75            104                                                         167                  191                            


Chain K from PDB  Type:PROTEIN  Length:152
                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.hhhh.hhhhhhhhhhh.....eeeeeeeeee..eeeeeeee.........eeeeeee..........eeeeeee........hhhhhhhhhhhhhhhhh.eeeee..eeeeeee..hhhhhhhhhhh..........eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qyz K   2 YLSKVIIARAWSRDLYQLHQGLWHLFPNDFLFHVEKRNTPEGCHVLLQSAQMPVSTAVATVIKTKQVEFQLQVGVPLYFRLRANPIKPLIKEAEQIAWLQRKLGNAARVEDVHPVCFEGVLTIDAPALIDLVQQGIGPAKSMGCGLLSLAPL 199
                                    11        21       |37        47        57        67        77        87      |117       127       137   ||  166  ||   177       187       197  
                                                      29|                                                        94|                       141|     169|                            
                                                       36                                                        115                        161      171                            


Chain L from PDB  Type:RNA  Length:55
                                                                                       
                 4qyz L   1 AUAAACCGCCAGUGAUAAGUGGAAUGCCAUGUGGGCUGUCGAGUUCCCGGCCGGG  61
                                    10        20        30        40        50|    
                                                                            50|    
                                                                             57    


Chain M from PDB  Type:DNA  Length:33
                                                                 
                 4qyz M   5 AGACAGCCCACATGGCATTCCACTTATCACTGG  37
                                    14        24        34
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QYZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QYZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QYZ)

(-) Gene Ontology  (14, 30)

Asymmetric/Biological Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
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  Cis Peptide Bonds
    Ala E:265 - Lys E:266   [ RasMol ]  
    Ala F:265 - Lys F:266   [ RasMol ]  
    Ala F:342 - Gln F:343   [ RasMol ]  
    Ala G:265 - Lys G:266   [ RasMol ]  
    Ala H:265 - Lys H:266   [ RasMol ]  
    Ala I:265 - Lys I:266   [ RasMol ]  
    Ala J:126 - Thr J:127   [ RasMol ]  
    Arg A:167 - Gly A:168   [ RasMol ]  
    Asn A:109 - Asp A:110   [ RasMol ]  
    Glu J:175 - Pro J:176   [ RasMol ]  
    Gly A:159 - Gly A:160   [ RasMol ]  
    Gly A:165 - Leu A:166   [ RasMol ]  
    Gly A:246 - Ile A:247   [ RasMol ]  
    Gly B:68 - Lys B:69   [ RasMol ]  
    Gly C:68 - Lys C:69   [ RasMol ]  
    Gly I:324 - Leu I:325   [ RasMol ]  
    Phe D:31 - Gly D:32   [ RasMol ]  
    Phe F:31 - Gly F:32   [ RasMol ]  
    Phe G:31 - Gly G:32   [ RasMol ]  
    Phe H:31 - Gly H:32   [ RasMol ]  
    Phe I:31 - Gly I:32   [ RasMol ]  
    Ser A:217 - Asn A:218   [ RasMol ]  
    Thr A:205 - Glu A:206   [ RasMol ]  
    Trp B:140 - Gly B:141   [ RasMol ]  
    Val D:100 - Asp D:101   [ RasMol ]  
    Val E:337 - Asp E:338   [ RasMol ]  
 

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  4qyz
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  CAS5_ECOLI | Q46898
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  CSE1_ECOLI | Q46901
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CAS5_ECOLI | Q46898: 4tvx 4u7u 5cd4 5h9e 5h9f
        CAS6_ECOLI | Q46897: 4dzd 4tvx 4u7u 5cd4 5h9e 5h9f
        CASC_ECOLI | Q46899: 4tvx 4u7u 5cd4 5h9e 5h9f
        CSE1_ECOLI | Q46901: 4tvx 4u7u 5cd4 5h9e 5h9f
        CSE2_ECOLI | P76632: 4tvx 4u7u 5cd4 5h9e 5h9f

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4QYZ)