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(-) Description

Title :  MYCOBACTERIUM TUBERCULOSIS PROTEIN RV1155 IN COMPLEX WITH CO-ENZYME F420
 
Authors :  E. H. Mashalidis, A. G. Gittis, A. Tomczak, C. Abell, C. E. Barry Iii, D. N. Garboczi
Date :  14 Jul 14  (Deposition) - 25 Feb 15  (Release) - 20 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. H. Mashalidis, A. G. Gittis, A. Tomczak, C. Abell, C. E. Barry, D. N. Garboczi
Molecular Insights Into The Binding Of Coenzyme F420 To The Conserved Protein Rv1155 From Mycobacterium Tuberculosis.
Protein Sci. V. 24 729 2015
PubMed-ID: 25644473  |  Reference-DOI: 10.1002/PRO.2645

(-) Compounds

Molecule 1 - RV1155 PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RV1155
    Gene: MT7199_1184
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1138877

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 17)

Asymmetric/Biological Unit (6, 17)
No.NameCountTypeFull Name
1EDO4Ligand/Ion1,2-ETHANEDIOL
2F422Ligand/IonCOENZYME F420
3FMT5Ligand/IonFORMIC ACID
4NA1Ligand/IonSODIUM ION
5PDO4Ligand/Ion1,3-PROPANDIOL
6PGO1Ligand/IonS-1,2-PROPANEDIOL

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:108 , TRP A:117 , ARG A:121BINDING SITE FOR RESIDUE FMT A 301
02AC2SOFTWAREASP A:7 , VAL A:139BINDING SITE FOR RESIDUE FMT A 302
03AC3SOFTWARELYS A:26 , HIS A:27 , ASN A:60 , ARG A:63 , HOH A:417 , F42 B:201BINDING SITE FOR RESIDUE FMT A 303
04AC4SOFTWAREASP A:74 , ASP A:75 , PRO A:144 , PGO A:310 , HOH A:402BINDING SITE FOR RESIDUE PDO A 304
05AC5SOFTWAREASP A:97 , ASP A:98BINDING SITE FOR RESIDUE PDO A 305
06AC6SOFTWARETRP A:77 , GLU A:113BINDING SITE FOR RESIDUE EDO A 306
07AC7SOFTWAREASP A:72 , ILE B:19 , VAL B:21 , ASN B:35 , ASP B:72BINDING SITE FOR RESIDUE EDO A 307
08AC8SOFTWAREGLU A:53 , ARG A:62 , ARG A:128BINDING SITE FOR RESIDUE EDO A 308
09AC9SOFTWAREASP A:28 , PRO B:95 , ASP B:118 , PDO B:205BINDING SITE FOR RESIDUE EDO A 309
10BC1SOFTWAREASP A:74 , PDO A:304 , HOH A:401BINDING SITE FOR RESIDUE PGO A 310
11BC2SOFTWARELYS A:26 , GLN A:32 , ASN A:35 , VAL A:36 , GLN A:37 , SER A:50 , ILE A:51 , ARG A:55 , ALA A:56 , LYS A:57 , ASN A:60 , ARG A:129 , FMT A:303 , HOH A:411 , TRP B:77 , SER B:78 , TYR B:79 , HIS B:138 , TYR B:140 , LEU B:142 , HOH B:308BINDING SITE FOR RESIDUE F42 B 201
12BC3SOFTWARETRP A:77 , TYR A:79 , HIS A:138 , TYR A:140 , HOH A:426 , LYS B:26 , HIS B:27 , GLN B:32 , ASN B:35 , ARG B:55 , ALA B:56 , LYS B:57 , ARG B:59 , ASN B:60 , FMT B:204 , NA B:207 , HOH B:331BINDING SITE FOR RESIDUE F42 B 202
13BC4SOFTWAREPRO B:91 , ASP B:97 , THR B:99 , HOH B:318BINDING SITE FOR RESIDUE FMT B 203
14BC5SOFTWAREARG B:59 , F42 B:202 , NA B:207BINDING SITE FOR RESIDUE FMT B 204
15BC6SOFTWARELYS A:26 , ASP A:28 , EDO A:309 , GLU B:83 , ASP B:118 , SER B:137 , HIS B:138BINDING SITE FOR RESIDUE PDO B 205
16BC7SOFTWAREASP B:64 , PRO B:65 , ARG B:66 , THR B:85 , SER B:115 , TRP B:117 , ASP B:118 , ARG B:147BINDING SITE FOR RESIDUE PDO B 206
17BC8SOFTWAREARG B:55 , ALA B:56 , F42 B:202 , FMT B:204BINDING SITE FOR RESIDUE NA B 207

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QVB)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4QVB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QVB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QVB)

(-) Exons   (0, 0)

(no "Exon" information available for 4QVB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:141
                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..eeeeeee.....eeeeeeeeeee....eeeeeee..hhhhhhhhhh.eeeeeee......eeeeeee.ee........hhhhhhhhhhhhhhhh...hhhhhhhhhhhhheeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qvb A   4 QVFDDKLLAVISGNSIGVLATIKHDGRPQLSNVQYHFDPRKLLIQVSIAEPRAKTRNLRRDPRASILVDADDGWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYRQAMVTDRRVLLTLPISHVYGLPP 144
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143 


Chain B from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhh..eeeeeee.....eeeeeee.eee....eeeeeee..hhhhhhhhhh.eeeeeee......eeeeeee.ee........hhhhhhhhhhhhhhhh...hhhhhhhhhhhh.eeeeeee..eeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4qvb B   4 QVFDDKLLAVISGNSIGVLATIKHDGRPQLSNVQYHFDPRKLLIQVSIAEPRAKTRNLRRDPRASILVDADDGWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYRQAMVTDRRVLLTLPISHVYGLPPGMR 147
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QVB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QVB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QVB)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        F420R_MYCTU | O06553: 1w9a 1xxo 1y30 2aq6

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