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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE 6-PHOSPHOGLUCONOLACTONASE (BACUNI_04672) FROM BACTEROIDES UNIFORMIS ATCC 8492 AT 2.20 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  01 Jul 14  (Deposition) - 23 Jul 14  (Release) - 23 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Lactonase, Pf10282 Family Protein, 7-Bladed Beta-Propeller, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative 6-Phosphogluconolactonase (Bacuni_04672) From Bacteroides Uniformis Atcc 8492 At 2. 20 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE 6-PHOSPHOGLUCONOLACTONASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: PB1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BACUNI_04672, ZP_02073211.1
    Organism Scientific: BACTEROIDES UNIFORMIS ATCC 8492
    Organism Taxid: 411479

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric Unit (3, 15)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2MSE10Mod. Amino AcidSELENOMETHIONINE
3PEG4Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 1 (3, 9)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2MSE5Mod. Amino AcidSELENOMETHIONINE
3PEG3Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2MSE5Mod. Amino AcidSELENOMETHIONINE
3PEG1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:208 , THR B:264BINDING SITE FOR RESIDUE ACT A 401
2AC2SOFTWAREPRO A:66 , SER A:84 , THR A:90BINDING SITE FOR RESIDUE PEG A 402
3AC3SOFTWARETHR A:54 , LYS A:343 , THR A:354BINDING SITE FOR RESIDUE PEG A 403
4AC4SOFTWAREGLY A:125 , GLN A:144 , LYS A:145 , GLY A:147BINDING SITE FOR RESIDUE PEG A 404
5AC5SOFTWARETYR A:281 , VAL A:347 , GLY B:158 , SER B:159BINDING SITE FOR RESIDUE PEG B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QRJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4QRJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QRJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QRJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4QRJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:345
                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee.......eeeeeeee.....eeeeeeee......eee.....eeeeee.......eeeeeeee....eeeeeeeee.........ee...eeee......eeeeee...........eeee...............eeeeee.....eeeeee....eeeeee........ee....ee......eeeeee.....eeeeee....eeeeeeee..eeeeeeeee........eeeeee.....eeeeee.....eeeeeee......eeeeeeee......eeee.....eeeeee....eeeeeee......eee....ee...eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qrj A  26 DQDELAmLIGTYTNGSSKGIYTFRFNQETGTAVPLSSAALPNPSYLVPSEDGEFVYAVSEmNDSTAALSSLAFDRETGELRLLNTVPTFGADPCYVATNGREVLTANYSGGTmSVFPLQKDGTLAPADTLFQGSATGPDAIRQATPHIHCTVFSPDGKYIFATDFSADRILRFVmHPDNPIPHASLEAVGIEADSGPRHLTFSPNGKFAYLITELSGKVIAFSYDDGCLEQIQTITADTVAARGSADIHLSPDGKYLYASNRLKEDGIAIFAVNPENGTLAKVGYQPTGIHPRNFNITPNGKYLLAACRDSNVIQVYKRNEVTGLLEDTHQDIVVDmPVCVQFVS 370
                                  | 35        45        55        65        75        85|       95       105       115       125       135  |    145       155       165       175       185       195    |  205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355      |365     
                                 32-MSE                                                86-MSE                                             138-MSE                                                       200-MSE                                                                                                                                                           362-MSE    


Chain B from PDB  Type:PROTEIN  Length:343
                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee.......eeeeeeee.....eeeeeeee......eee.....eeeeee.......eeeeeeee....eeeeeeeee.........ee...eeee......eeeeee...........eeee...............eeeeee.....eeeeee....eeeeee........ee....ee......eeeeee.....eeeeee....eeeeeeee..eeeeeeeee........eeeeee.....eeeeee.....eeeeeee......eeeeeeee......eeee.....eeeeee....eeeeeee......eee....ee...eeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qrj B  27 QDELAmLIGTYTNGSSKGIYTFRFNQETGTAVPLSSAALPNPSYLVPSEDGEFVYAVSEmNDSTAALSSLAFDRETGELRLLNTVPTFGADPCYVATNGREVLTANYSGGTmSVFPLQKDGTLAPADTLFQGSATGPDAIRQATPHIHCTVFSPDGKYIFATDFSADRILRFVmHPDNPIPHASLEAVGIEADSGPRHLTFSPNGKFAYLITELSGKVIAFSYDDGCLEQIQTITADTVAARGSADIHLSPDGKYLYASNRLKEDGIAIFAVNPENGTLAKVGYQPTGIHPRNFNITPNGKYLLAACRDSNVIQVYKRNEVTGLLEDTHQDIVVDmPVCVQFV 369
                                 |  36        46        56        66        76        86        96       106       116       126       136 |     146       156       166       176       186       196   |   206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356     | 366   
                                32-MSE                                                86-MSE                                             138-MSE                                                       200-MSE                                                                                                                                                           362-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QRJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QRJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QRJ)

(-) Gene Ontology  (0, 0)

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