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(-) Description

Title :  PROTEIN ARGININE METHYLTRANSFERASE 3 IN COMPLEX WITH COMPOUND MTV044246
 
Authors :  A. Dong, E. Dobrovetsky, W. Tempel, H. He, K. Zhao, D. Smil, M. Landon, X. Z. Chen, M. Dai, Z. Yu, Y. Lin, H. Zhang, K. Zhao, M. Schapira, P. J. Brown C. Bountra, C. H. Arrowsmith, A. M. Edwards, M. Vedadi, Structural Ge Consortium (Sgc)
Date :  27 Jun 14  (Deposition) - 17 Sep 14  (Release) - 15 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.08
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Prmt3, Structural Genomics, Structural Genomics Consortium, Sgc, Transferase, Epigenetics (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Dobrovetsky, A. Dong, W. Tempel, H. He, D. Smil, M. Landon, X. Luo, Z. Chen, M. Dai, Z. Yu, Y. Lin, H. Zhang, K. Zhao, M. Schapira, P. J. Brown C. Bountra, C. H. Arrowsmith, A. M. Edwards, M. Vedadi, Structural Genomics Consortium (Sgc)
Protein Arginine Methyltransferase 3 In Complex With Compound Mtv044246
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PRMT3 PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A-LIC
    Expression System Strain: BL21(DE3)-CODON PLUS RIL(STRATAGEN)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PRMT3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 15)

Asymmetric Unit (4, 15)
No.NameCountTypeFull Name
13BQ1Ligand/Ion1-{2-[1-(AMINOMETHYL)CYCLOHEXYL]ETHYL}-3-ISOQUINOLIN-6-YLUREA
2CL1Ligand/IonCHLORIDE ION
3GOL1Ligand/IonGLYCEROL
4UNX12Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 1 (3, 28)
No.NameCountTypeFull Name
13BQ2Ligand/Ion1-{2-[1-(AMINOMETHYL)CYCLOHEXYL]ETHYL}-3-ISOQUINOLIN-6-YLUREA
2CL-1Ligand/IonCHLORIDE ION
3GOL2Ligand/IonGLYCEROL
4UNX24Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:245 , GLU A:248 , ASP A:389 , LYS A:392 , HIS A:393 , ARG A:396 , VAL A:420 , GLU A:422 , THR A:466 , ALA A:467 , HOH A:775BINDING SITE FOR RESIDUE 3BQ A 601
2AC2SOFTWARETYR A:265 , PRO A:268 , LYS A:292BINDING SITE FOR RESIDUE GOL A 602
3AC3SOFTWARETYR A:471 , GLN A:491 , HOH A:710BINDING SITE FOR RESIDUE CL A 603

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QQN)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Tyr A:376 -Pro A:377

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QQN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QQN)

(-) Exons   (0, 0)

(no "Exon" information available for 4QQN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:299
                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhh...eeeeee..hhhhhhhhhhhhh.....eeeee............eeeee............hhhhhhhhhhhheeeeeeee..eeeeeeeee.hhhhhhhhhhhhhh.....hhhhhhhhh...eee..hhhhh....eeeeeee....hhhhhheeeeeeee....eeeeeeeeeeeeee.......eeee...........eeeeeeeeeeee....eeeeeeeee....eeeeee..eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qqn A 244 YGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWDDVYGFKMSCMKKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTSISDLEFSSDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNSLTVTLTLNNSTQTYGL 547
                                   253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523 ||    538         
                                                                                                                                                                                                                                                                                                                   525|                
                                                                                                                                                                                                                                                                                                                    531
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QQN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QQN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QQN)

(-) Gene Ontology  (17, 21)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ANM3_HUMAN | O60678: 2fyt 3smq 4hsg 4ryl
        Q8WUV3_HUMAN | Q8WUV3: 4hsg 4ryl

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4QQN)