4QPP - JenaLib

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Title :   THE CRYSTAL STRUCTURE OF HUMAN HMT1 HNRNP METHYLTRANSFERASE-LIKE PROTEIN 6 IN COMPLEX WITH COMPOUND DS-421 (2-{4-[3-CHLORO-2-(2-METHOXYPHENYL)-1H-INDOL-5-YL]PIPERIDIN-1-YL}-N-METHYLETHANAMINE

Authors :   A. Dong, H. Zeng, D. Smil, J. R. Walker, H. He, M. Eram, C. Bountra, C. H. Ar A. M. Edwards, M. Vedadi, P. J. Brown, H. Wu, Structural Genomics Con (Sgc)

Date :   24 Jun 14 (Deposition) - 20 Aug 14 (Release) - 20 Aug 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.52

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,D  (2x)
Biol. Unit 2: B,E  (2x)
Biol. Unit 3: C,F  (2x)

Keywords :   Hrmt1L6, Methyltransferase-Like Protein, Structural Genomics, Structural Genomics Consortium, Sgc, Transferase, Ds421, Transferase- Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. Zeng, A. Dong, D. Smil, J. R. Walker, H. He, M. Eram, C. Bountra, C. H. Arrowsmith, A. M. Edwards, M. Vedadi, P. J. Brown, H. Wu
The Crystal Structure Of Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 In Complex With Compound Ds-421
To Be Published
PubMed: search

Molecule 1 - PROTEIN ARGININE N-METHYLTRANSFERASE 6
	Chains	:	A, B, C
	EC Number	:	2.1.1.-, 2.1.1.125
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Cell Line	:	SF9
	Expression System Plasmid	:	PFBOH-MHL
	Expression System Taxid	:	7108
	Expression System Vector Type	:	PLASMID
	Gene	:	HRMT1L6, PRMT6
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN METHYLTRANSFERASE- LIKE PROTEIN 6, HISTONE-ARGININE N-METHYLTRANSFERASE PRMT6

Molecule 2 - POLY-UNK
	Chains	:	D, E, F
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Cell Line	:	SF9
	Expression System Taxid	:	7108
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (2x)	:	A			D
Biological Unit 2 (2x)	:		B			E
Biological Unit 3 (2x)	:			C			F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 22)

No.	Name	Count	Type	Full Name
1	36S	3	Ligand/Ion	2-{4-[3-CHLORO-2-(2-METHOXYPHENYL)-1H-INDOL-5-YL]PIPERIDIN-1-YL}-N-METHYLETHANAMINE
2	SAH	3	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE
3	UNK	16	Mod. Amino Acid

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	36S	2	Ligand/Ion	2-{4-[3-CHLORO-2-(2-METHOXYPHENYL)-1H-INDOL-5-YL]PIPERIDIN-1-YL}-N-METHYLETHANAMINE
2	SAH	2	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE
3	UNK	-1	Mod. Amino Acid

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	36S	2	Ligand/Ion	2-{4-[3-CHLORO-2-(2-METHOXYPHENYL)-1H-INDOL-5-YL]PIPERIDIN-1-YL}-N-METHYLETHANAMINE
2	SAH	2	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE
3	UNK	-1	Mod. Amino Acid

Biological Unit 3 (2, 4)

No.	Name	Count	Type	Full Name
1	36S	2	Ligand/Ion	2-{4-[3-CHLORO-2-(2-METHOXYPHENYL)-1H-INDOL-5-YL]PIPERIDIN-1-YL}-N-METHYLETHANAMINE
2	SAH	2	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE
3	UNK	-1	Mod. Amino Acid

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:57 , MET A:60 , ARG A:66 , GLY A:90 , ALA A:91 , ILE A:95 , LEU A:96 , GLU A:112 , ALA A:113 , SER A:114 , PRO A:139 , VAL A:140 , GLU A:141 , GLU A:155 , MET A:166 , SER A:169 , HOH A:1108 , HOH A:1114 , HOH A:1115	BINDING SITE FOR RESIDUE SAH A 1000
2	AC2	SOFTWARE	LEU A:162 , GLU A:264 , LEU A:267 , PRO A:345 , PRO A:350 , ARG A:351 , ARG A:352	BINDING SITE FOR RESIDUE 36S A 1001
3	AC3	SOFTWARE	HIS B:57 , MET B:60 , ARG B:66 , GLY B:90 , ALA B:91 , LEU B:96 , GLU B:112 , ALA B:113 , SER B:114 , PRO B:139 , VAL B:140 , GLU B:141 , GLU B:155 , MET B:166 , SER B:169 , HOH B:1113 , HOH B:1117 , HOH B:1118 , HOH B:1169	BINDING SITE FOR RESIDUE SAH B 1000
4	AC4	SOFTWARE	LEU B:162 , SER B:168 , GLU B:264 , LEU B:267 , LEU B:344 , PRO B:345 , PRO B:350 , ARG B:352	BINDING SITE FOR RESIDUE 36S B 1001
5	AC5	SOFTWARE	HIS C:57 , MET C:60 , ARG C:66 , GLY C:90 , ALA C:91 , LEU C:96 , GLU C:112 , ALA C:113 , SER C:114 , PRO C:139 , VAL C:140 , GLU C:141 , GLU C:155 , MET C:166 , SER C:169 , HOH C:1120 , HOH C:1122 , HOH C:1123 , HOH C:1178	BINDING SITE FOR RESIDUE SAH C 1000
6	AC6	SOFTWARE	LEU C:162 , GLU C:264 , LEU C:267 , PRO C:345 , PRO C:350 , ARG C:351 , ARG C:352 , LEU C:353	BINDING SITE FOR RESIDUE 36S C 1001

Asymmetric Unit

No.	Residues
1	A:50	-	A:229
2	B:50	-	B:229
3	C:50	-	C:229

Asymmetric Unit

No.	Residues
1	Leu A:185	-	Pro A:186
2	Leu B:185	-	Pro B:186
3	Leu C:185	-	Pro C:186

(no "SAP(SNP)/Variant" information available for 4QPP)

(no "PROSITE Motif" information available for 4QPP)

(no "Exon" information available for 4QPP)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:329
                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhh...eeeeee...hhhhhhhhhhhh.....eeeee...........eeeee............hhhhhhhhhhhheeeeeeee..eeeeeeeee.hhhhhhhhhh..hhhhhhh..hhhhhhhhhhhhhhh...eee..hhhhh....eeeeeee....hhhhhhhhheeeeeeee....eeeeeeeeeeeeee........eeee...........eeeeeeeeeeee....eeeeeeeeee.......eeeeeeeee.....eeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4qpp A   47 YYECYSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAELFIVPISDQMLEWRLGFWSQVKQHYGVDMSCLEGFATRCLMGHSEIVVQGLSGEDVLARPQRFAQLELSRAGLEQELEAGVGGRFRCSCYGSAPMHGFAIWFQVTFPGGESEKPLVLSTSPFHPATHWKQALLYLNEPVQVEQDTDVSGEITLLPSRDNPRRLRVLLRYKVGDQEEKTKDFAMED  375
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366

Chain B from PDB  Type:PROTEIN  Length:328
                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhh...eeeeee...hhhhhhhhhhhh.....eeeee...........eeeeee...........hhhhhhhhhhhheeeeeeee..eeeeeeeee.hhhhhhhhhh..hhhhhhh..hhhhhhhhhhhhhhh...eee..hhhhh....eeeeeee....hhhhhhhhheeeeeeee....eeeeeeeeeeeeee.hhhhh..eeee...........eeeeeeeeeeee....eeeeeeeeee.......eeeeeeeee.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4qpp B   47 YYECYSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAELFIVPISDQMLEWRLGFWSQVKQHYGVDMSCLEGFATRCLMGHSEIVVQGLSGEDVLARPQRFAQLELSRAGLEQELEAGVGGRFRCSCYGSAPMHGFAIWFQVTFPGGESEKPLVLSTSPFHPATHWKQALLYLNEPVQVEQDTDVSGEITLLPSRDNPRRLRVLLRYKVGDQEEKTKDFAME  374
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366

Chain C from PDB  Type:PROTEIN  Length:328
                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhh...eeeeee...hhhhhhhhhhhh.....eeeee...........eeeeee...........hhhhhhhhhhhheeeeeeee..eeeeeeeee.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...eee..hhhhh....eeeeeee....hhhhhhhhheeeeeeee....eeeeeeeeeeeeee........eeee...........eeeeeeeeeeee....eeeeeeeeee.......eeeeeeeee.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4qpp C   47 YYECYSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAELFIVPISDQMLEWRLGFWSQVKQHYGVDMSCLEGFATRCLMGHSEIVVQGLSGEDVLARPQRFAQLELSRAGLEQELEAGVGGRFRCSCYGSAPMHGFAIWFQVTFPGGESEKPLVLSTSPFHPATHWKQALLYLNEPVQVEQDTDVSGEITLLPSRDNPRRLRVLLRYKVGDQEEKTKDFAME  374
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366

Chain D from PDB  Type:PROTEIN  Length:6
                                       
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                4qpp D 1000 xxxxxx 1005
                            ||||||
                         1000-UNK|
                          1001-UNK
                           1002-UNK
                            1003-UNK
                             1004-UNK
                              1005-UNK

Chain E from PDB  Type:PROTEIN  Length:5
                                      
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                4qpp E 1000 xxxxx 1004
                            |||||
                            |||||
                         1000-UNK
                          1001-UNK
                           1002-UNK
                            1003-UNK
                             1004-UNK

Chain F from PDB  Type:PROTEIN  Length:5
                                      
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                4qpp F 1000 xxxxx 1004
                            |||||
                            |||||
                         1000-UNK
                          1001-UNK
                           1002-UNK
                            1003-UNK
                             1004-UNK

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4QPP)

(no "CATH Domain" information available for 4QPP)

(no "Pfam Domain" information available for 4QPP)

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	Cis Peptide Bonds
		Leu A:185 - Pro A:186	[ RasMol ]
		Leu B:185 - Pro B:186	[ RasMol ]
		Leu C:185 - Pro C:186	[ RasMol ]

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Description

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Ligands, Modified Residues, Ions (3, 22)

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SS Bonds (3, 3)

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