4QP5 - JenaLib

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Title :   CATALYTIC DOMAIN OF THE ANTIMICROBIAL PEPTIDASE LYSOSTAPHIN FROM STAPHYLOCOCCUS SIMULANS CRYSTALLIZED IN THE PRESENCE OF PHOSPHATE

Authors :   I. Sabala, E. Jagielska, P. T. Bardelang, H. Czapinska, S. O. Dahms, J. A R. James, M. E. Than, N. R. Thomas, M. Bochtler

Date :   22 Jun 14 (Deposition) - 16 Jul 14 (Release) - 01 Oct 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.26

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Peptidase Family M23, Peptidoglycan Amidase, Metallopeptidase, Peptidoglycan, Hydrolase, Extracellular (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   I. Sabala, E. Jagielska, P. T. Bardelang, H. Czapinska, S. O. Dahms, J. A. Sharpe, R. James, M. E. Than, N. R. Thomas, M. Bochtler
Crystal Structure Of The Antimicrobial Peptidase Lysostaphi From Staphylococcus Simulans.
Febs J. V. 281 4112 2014
PubMed-ID: 25039253 | Reference-DOI: 10.1111/FEBS.12929

Molecule 1 - LYSOSTAPHIN
	Chains	:	A, B
	EC Number	:	3.4.24.75
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET21A
	Expression System Strain	:	BL21 (DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	CATALYTIC DOMAIN, UNP RESIDUES 248-386
	Gene	:	U66883.1
	Organism Scientific	:	STAPHYLOCOCCUS SIMULANS BV. STAPHYLOLYTICUS
	Organism Taxid	:	1287
	Synonym	:	GLYCYL-GLYCINE ENDOPEPTIDASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 6)

No.	Name	Count	Type	Full Name
1	GOL	2	Ligand/Ion	GLYCEROL
2	PO4	2	Ligand/Ion	PHOSPHATE ION
3	ZN	2	Ligand/Ion	ZINC ION

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	PO4	1	Ligand/Ion	PHOSPHATE ION
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	PO4	1	Ligand/Ion	PHOSPHATE ION
3	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:279 , ASP A:283 , HIS A:362 , PO4 A:402	BINDING SITE FOR RESIDUE ZN A 401
2	AC2	SOFTWARE	TYR A:270 , HIS A:279 , ASP A:283 , HIS A:329 , HIS A:360 , HIS A:362 , ZN A:401 , HOH A:518 , HOH A:581 , HOH A:598 , HOH A:599	BINDING SITE FOR RESIDUE PO4 A 402
3	AC3	SOFTWARE	SER A:306 , GLY A:310 , GLN A:313 , TRP A:326 , MET A:328 , ASN A:372 , HOH A:549	BINDING SITE FOR RESIDUE GOL A 403
4	AC4	SOFTWARE	HIS B:279 , ASP B:283 , HIS B:362 , PO4 B:402	BINDING SITE FOR RESIDUE ZN B 401
5	AC5	SOFTWARE	TYR B:270 , HIS B:279 , ASP B:283 , HIS B:329 , HIS B:360 , HIS B:362 , ZN B:401 , HOH B:530 , HOH B:546 , HOH B:603	BINDING SITE FOR RESIDUE PO4 B 402
6	AC6	SOFTWARE	SER B:306 , TYR B:308 , GLY B:310 , GLN B:313 , ASN B:372 , HOH B:562 , HOH B:578	BINDING SITE FOR RESIDUE GOL B 403

(no "SS Bond" information available for 4QP5)

(no "Cis Peptide Bond" information available for 4QP5)

(no "SAP(SNP)/Variant" information available for 4QP5)

(no "PROSITE Motif" information available for 4QP5)

(no "Exon" information available for 4QP5)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhh......ee...hhhh.ee..eeee.....eee....eeeeeeeee....eeeeeeee....eeeeeeee.ee......ee....eeee..........eeeeeeee.......ee.hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qp5 A 251 HEHSAQWLNNYKKGYGYGPYPLGINGGMHYGVDFFMNIGTPVKAISSGKIVEAGWSNYGGGNQIGLIENDGVHRQWYMHLSKYNVKVGDYVKAGQIIGWSGSTGYSTAPHLHFQRMVNSFSNSTAQDPMPFLKS 384
                                   260       270       280       290       300       310       320       330       340       350       360       370       380

Chain B from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhh......ee....hhh.ee..eeee.....eee....eeeeeeeee....eeeeeeee....eeeeeeee.ee......ee....eeee..........eeeeeeee.......ee.hhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qp5 B 252 EHSAQWLNNYKKGYGYGPYPLGINGGMHYGVDFFMNIGTPVKAISSGKIVEAGWSNYGGGNQIGLIENDGVHRQWYMHLSKYNVKVGDYVKAGQIIGWSGSTGYSTAPHLHFQRMVNSFSNSTAQDPMPFLKS 384
                                   261       271       281       291       301       311       321       331       341       351       361       371       381

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4QP5)

(no "CATH Domain" information available for 4QP5)

(no "Pfam Domain" information available for 4QP5)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	LSTP_STASI \| P10547	:	4lxc 4qpb 5leo

1qwy	LATENT LYTM AT 1.3 A RESOLUTION
1r77	CRYSTAL STRUCTURE OF THE CELL WALL TARGETING DOMAIN OF PEPTIDYLGLYCAN HYDROLASE ALE-1
2b0p	TRUNCATED S. AUREUS LYTM, P212121 CRYSTAL FORM
2b13	TRUNCATED S. AUREUS LYTM, P41 CRYSTAL FORM
2b44	TRUNCATED S. AUREUS LYTM, P 32 2 1 CRYSTAL FORM
3it5	CRYSTAL STRUCTURE OF THE LASA VIRULENCE FACTOR FROM PSEUDOMONAS AERUGINOSA
3it7	CRYSTAL STRUCTURE OF THE LASA VIRULENCE FACTOR FROM PSEUDOMONAS AERUGINOSA
4bh5	LYTM DOMAIN OF ENVC, AN ACTIVATOR OF CELL WALL AMIDASES IN ESCHERICHIA COLI
4lxc	MATURE FORM OF THE ANTIMICROBIAL PEPTIDASE LYSOSTAPHIN FROM STAPHYLOCOCCUS SIMULANS
4qpb

Description

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Chains, Units

Ligands, Modified Residues, Ions (3, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

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Gene Ontology (7, 7)

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