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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HISTONE MRNA STEM-LOOP, STEM-LOOP BINDING PROTEIN (PHOSPHORYLATED), AND 3'HEXO TERNARY COMPLEX
 
Authors :  D. Tan, L. Tong
Date :  21 Jun 14  (Deposition) - 23 Jul 14  (Release) - 06 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E  (1x)
Keywords :  Histone Mrna 3'-End Processing, Histone Mrna Translation, Microrna Homeostasis, 5. 8S Rrna 3'-End Maturation, Zfp100, Lsm11, Phosphorylation, Nucleus, Rna-Hydrolase-Rna Binding Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Zhang, D. Tan, E. F. Derose, L. Perera, Z. Dominski, W. F. Marzluff, L. Tong, T. M. Hall
Molecular Mechanisms For The Regulation Of Histone Mrna Stem-Loop-Binding Protein By Phosphorylation.
Proc. Natl. Acad. Sci. Usa V. 111 E2937 2014
PubMed-ID: 25002523  |  Reference-DOI: 10.1073/PNAS.1406381111

(-) Compounds

Molecule 1 - HISTONE MRNA STEM-LOOP
    Chains: A, D
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - 3'-5' EXORIBONUCLEASE 1
    Chains: B, E
    EC Number: 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET24D
    Expression System Strain: BL21(DE3) STAR
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: SAP DOMAIN AND NUCLEASE DOMAIN (UNP RESIDUES 55-349)
    Gene: ERI1, 3'EXO, THEX1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: 3'-5' EXONUCLEASE ERI1, ERI-1 HOMOLOG, HISTONE MRNA 3'-END- SPECIFIC EXORIBONUCLEASE, HISTONE MRNA 3'-EXONUCLEASE 1, PROTEIN 3'HEXO, HEXO
 
Molecule 3 - HISTONE RNA HAIRPIN-BINDING PROTEIN
    Chains: C
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Strain: SF9
    Expression System Taxid: 7108
    Fragment: RNA-BINDING DOMAIN (UNP RESIDUES 125-223)
    Gene: SLBP, HBP
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HISTONE STEM-LOOP-BINDING PROTEIN

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ABCDE
Biological Unit 1 (1x): ABC  
Biological Unit 2 (1x):    DE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1TPO1Mod. Amino AcidPHOSPHOTHREONINE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1TPO1Mod. Amino AcidPHOSPHOTHREONINE
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1TPO-1Mod. Amino AcidPHOSPHOTHREONINE

(-) Sites  (0, 0)

(no "Site" information available for 4QOZ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QOZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4QOZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QOZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QOZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4QOZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:RNA  Length:26
                                                          
                 4qoz A   1 CCAAAGGCUCUUUUCAGAGCCACCCA  26
                                    10        20      


Chain B from PDB  Type:PROTEIN  Length:277
                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh.hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee...ee.............eeeeeeeeee.....eeeeeeee.........hhhhhhhhh.hhhhhhh..hhhhhhhhhhhhhhhh.......eeeee..hhhhhhhhhhhhhhh....hhhh.eeeehhhhhhhhhh...hhhhhhhhh.........hhhhhhhhhhhhhhhhhhh.......eeee..eeee................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qoz B  61 FSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQKLMSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTPPPQMPHFR 348
                                    70        80        90       100       110     ||128       138       148       158       168       178       188       198       208       218       228       238       248       258       268 ||    281       291       301       311       321       331       341       
                                                                                 116|                                                                                                                                              270|                                                                          
                                                                                  125                                                                                                                                               274                                                                          


Chain C from PDB  Type:PROTEIN  Length:73
                                                                                                         
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                 4qoz C 127 DFETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKtPNKFKKYSRRSWDQQIKLWKVALHFWDP 199
                                   136       146       156       166    |  176       186       196   
                                                                      171-TPO                        


Chain D from PDB  Type:RNA  Length:18
                                                  
                 4qoz D   9 UCUUUUCAGAGCCACCCA  26
                                    18        


Chain E from PDB  Type:PROTEIN  Length:280
                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh.hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh....eeee...ee.............eeeeeeeeee.....eeeeeeee.........hhhhhhhhh.hhhhhhh..hhhhhhhhhhhhhhhh.......eeeee..hhhhhhhhhhhhhhhh...hhhh.eeeehhhhhhhhhh....hhhhhhhhh.........hhhhhhhhhhhhhhhhhhh.......eeee..eeee..................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qoz E  61 FSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQKLMSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTPPPQMPHFRKL 350
                                    70        80        90       100       110     ||128       138       148       158       168       178       188       198       208       218       228       238       248       258       268  ||   280       290       300       310       320       330       340       350
                                                                                 116|                                                                                                                                               271|                                                                            
                                                                                  125                                                                                                                                                274
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QOZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QOZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QOZ)

(-) Gene Ontology  (32, 37)

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 Related Entries

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        ERI1_HUMAN | Q8IV48: 1w0h 1zbh 1zbu 4l8r
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(-) Related Entries Specified in the PDB File

4l8r CRYSTAL STRUCTURE OF THE HISTONE MRNA STEM-LOOP, STEM-LOOP BINDING PROTEIN (UNPHOSPHORYLATED), AND 3'HEXO TERNARY COMPLEX