4QNS - JenaLib

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Biological Unit 5 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF BROMODOMAIN FROM PLASMODIUM FACIPARUM GCN5, PF3D7_0823300

Authors :   M. Fonseca, C. Tallant, S. Knapp, P. Loppnau, F. Von Delft, A. K. Wernim C. H. Arrowsmith, A. M. Edwards, C. Bountra, R. Hui, Structural Genom Consortium (Sgc)

Date :   18 Jun 14 (Deposition) - 16 Jul 14 (Release) - 16 Jul 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.50

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: A (1x),B (1x),C (1x),D (1x)

Keywords :   Structural Genomics, Structural Genomics Consortium, Sgc, Bromodomain, Histone, Malaria, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Fonseca, C. Tallant, S. Knapp, P. Loppnau, R. Hui, A. K. Wernimont, C. H. Arrowsmith, A. M. Edwards, C. Bountra
Crystal Structure Of Bromodomain From Plasmodium Faciparum Gcn5, Pf3D7_0823300
To Be Published
PubMed: search

Molecule 1 - HISTONE ACETYLTRANSFERASE GCN5, PUTATIVE
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET15MHL
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Gene	:	GCN5, PF08_0034, PFNF54_02299
	Organism Scientific	:	PLASMODIUM FALCIPARUM
	Organism Taxid	:	36329

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:	A (1x)	B (1x)	C (1x)	D (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 18)

No.	Name	Count	Type	Full Name
1	ACT	3	Ligand/Ion	ACETATE ION
2	EDO	7	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	8	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 5)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	EDO	3	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 6)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 3 (2, 3)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 4 (2, 4)

No.	Name	Count	Type	Full Name
1	ACT	2	Ligand/Ion	ACETATE ION
2	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 5 (0, 0)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	EDO	-1	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	-1	Ligand/Ion	SULFATE ION

Asymmetric Unit (18, 18)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TRP A:1454 , TYR A:1457 , GLU A:1458 , EDO A:1503 , HOH A:1606 , HOH A:1640 , HOH A:1663 , THR D:1439 , THR D:1440 , ILE D:1441	BINDING SITE FOR RESIDUE SO4 A 1501
02	AC2	SOFTWARE	ARG A:1408 , ARG A:1411 , HIS A:1412	BINDING SITE FOR RESIDUE SO4 A 1502
03	AC3	SOFTWARE	GLY A:1422 , ILE A:1423 , LYS A:1426 , TRP A:1454 , SO4 A:1501 , ILE D:1441	BINDING SITE FOR RESIDUE EDO A 1503
04	AC4	SOFTWARE	GLY A:1355 , HIS A:1356 , LYS A:1357 , GLU A:1358 , EDO A:1505	BINDING SITE FOR RESIDUE EDO A 1504
05	AC5	SOFTWARE	GLY A:1355 , HIS A:1356 , EDO A:1504 , HOH D:1702	BINDING SITE FOR RESIDUE EDO A 1505
06	AC6	SOFTWARE	GLY B:1355 , HIS B:1356 , SO4 B:1506 , HOH B:1735 , HOH B:1736 , HOH B:1742	BINDING SITE FOR RESIDUE SO4 B 1501
07	AC7	SOFTWARE	ARG B:1408 , ARG B:1411 , LYS D:1398	BINDING SITE FOR RESIDUE SO4 B 1502
08	AC8	SOFTWARE	TRP B:1454 , TYR B:1457 , GLU B:1458 , EDO B:1504 , HOH B:1636 , HOH B:1679 , HOH B:1717 , THR C:1439 , THR C:1440 , ILE C:1441	BINDING SITE FOR RESIDUE SO4 B 1503
09	AC9	SOFTWARE	GLY B:1422 , ILE B:1423 , TYR B:1457 , SO4 B:1503 , ILE C:1441	BINDING SITE FOR RESIDUE EDO B 1504
10	BC1	SOFTWARE	PRO B:1380 , ASN B:1436 , TYR B:1442 , HOH B:1627	BINDING SITE FOR RESIDUE ACT B 1505
11	BC2	SOFTWARE	GLY B:1355 , HIS B:1356 , LYS B:1357 , GLU B:1358 , SO4 B:1501 , HOH B:1719	BINDING SITE FOR RESIDUE SO4 B 1506
12	BC3	SOFTWARE	ARG C:1408 , ARG C:1411	BINDING SITE FOR RESIDUE SO4 C 1501
13	BC4	SOFTWARE	LYS C:1426 , TYR C:1457 , GLU C:1458 , HOH C:1633 , HOH C:1681	BINDING SITE FOR RESIDUE SO4 C 1502
14	BC5	SOFTWARE	TYR C:1394 , ASP C:1395 , LYS C:1398	BINDING SITE FOR RESIDUE EDO C 1503
15	BC6	SOFTWARE	SER D:1386 , LEU D:1387 , SER D:1388	BINDING SITE FOR RESIDUE EDO D 1501
16	BC7	SOFTWARE	HIS B:1412 , ASP B:1414 , PRO D:1384 , VAL D:1385 , TYR D:1394 , HOH D:1639	BINDING SITE FOR RESIDUE EDO D 1502
17	BC8	SOFTWARE	GLU D:1419 , LYS D:1426 , TYR D:1457 , GLU D:1458 , HOH D:1657	BINDING SITE FOR RESIDUE ACT D 1503
18	BC9	SOFTWARE	LEU D:1366 , ARG D:1407 , ARG D:1411	BINDING SITE FOR RESIDUE ACT D 1504

(no "SS Bond" information available for 4QNS)

(no "Cis Peptide Bond" information available for 4QNS)

(no "SAP(SNP)/Variant" information available for 4QNS)

(no "PROSITE Motif" information available for 4QNS)

(no "Exon" information available for 4QNS)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:106
                                                                                                                                           
               SCOP domains ---------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                4qns A 1355 GHKEVQLKDQILGVLDYLEKQQSAWPFLKPVSLSEAPDYYDIIKEPTDILTMRRKARHGDYKTKEDFGIELKRMFDNCRLYNAPTTIYFKYANELQTLIWPKYEAI 1460
                                  1364      1374      1384      1394      1404      1414      1424      1434      1444      1454

Chain B from PDB  Type:PROTEIN  Length:106
                                                                                                                                           
               SCOP domains ---------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhh....hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                4qns B 1355 GHKEVQLKDQILGVLDYLEKQQSAWPFLKPVSLSEAPDYYDIIKEPTDILTMRRKARHGDYKTKEDFGIELKRMFDNCRLYNAPTTIYFKYANELQTLIWPKYEAI 1460
                                  1364      1374      1384      1394      1404      1414      1424      1434      1444      1454

Chain C from PDB  Type:PROTEIN  Length:101
                                                                                                                                      
               SCOP domains ----------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh...hhhhh...hhhhh.hhhhhh....hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                4qns C 1360 QLKDQILGVLDYLEKQQSAWPFLKPVSLSEAPDYYDIIKEPTDILTMRRKARHGDYKTKEDFGIELKRMFDNCRLYNAPTTIYFKYANELQTLIWPKYEAI 1460
                                  1369      1379      1389      1399      1409      1419      1429      1439      1449      1459

Chain D from PDB  Type:PROTEIN  Length:102
                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh...hhhhh.........hhhhhh....hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                4qns D 1359 VQLKDQILGVLDYLEKQQSAWPFLKPVSLSEAPDYYDIIKEPTDILTMRRKARHGDYKTKEDFGIELKRMFDNCRLYNAPTTIYFKYANELQTLIWPKYEAI 1460
                                  1368      1378      1388      1398      1408      1418      1428      1438      1448      1458

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4QNS)

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Description

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Chains, Units

Ligands, Modified Residues, Ions (3, 18)

Sites (18, 18)

SS Bonds (0, 0)

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