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(-) Description

Title :  THE CRYSTAL STRUCTURE OF AN EFFECTOR PROTEIN VIPE FROM LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA STR. PHILADELPHIA 1
 
Authors :  K. Tan, X. Xu, H. Cui, S. Liu, A. Savchenko, A. Joachimiak, Midwest Cent Structural Genomics (Mcsg)
Date :  17 Jun 14  (Deposition) - 16 Jul 14  (Release) - 16 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Structural Genomics, Psi-Biology, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, X. Xu, H. Cui, S. Liu, A. Savchenko, A. Joachimiak
The Crystal Structure Of An Effector Protein Vipe From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - VIPE
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: P15TVLIC
    Expression System Strain: BL21-CODONPLUS(DE3)-RIPL
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1-153
    Gene: LPG2813, VIPE
    Organism Scientific: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA STR. PHILADELPHIA 1
    Organism Taxid: 272624
    Strain: PHILADELPHIA 1

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 19)

Asymmetric Unit (2, 19)
No.NameCountTypeFull Name
1BME4Ligand/IonBETA-MERCAPTOETHANOL
2MSE15Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 7)
No.NameCountTypeFull Name
1BME2Ligand/IonBETA-MERCAPTOETHANOL
2MSE5Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1BME1Ligand/IonBETA-MERCAPTOETHANOL
2MSE5Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (2, 6)
No.NameCountTypeFull Name
1BME1Ligand/IonBETA-MERCAPTOETHANOL
2MSE5Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:56 , SER A:99 , HOH A:367BINDING SITE FOR RESIDUE BME A 201
2AC2SOFTWAREARG A:97 , TYR A:113 , PRO A:114 , THR A:115 , LYS A:116 , HOH A:433BINDING SITE FOR RESIDUE BME A 202
3AC3SOFTWAREARG B:97 , TYR B:113 , PRO B:114 , THR B:115 , LYS B:116BINDING SITE FOR RESIDUE BME B 201
4AC4SOFTWAREASN C:93 , ARG C:97 , TYR C:113 , PRO C:114 , THR C:115 , LYS C:116BINDING SITE FOR RESIDUE BME C 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QN8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4QN8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QN8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QN8)

(-) Exons   (0, 0)

(no "Exon" information available for 4QN8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:153
                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh...hhhhhhhhh.......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qn8 A   1 mPLTQTQRLINTYGASLKNGTISNEELIILLDPNTFTKSEGYVDPNAPVSDSNHSKmDAIKDFVLTIGPTLDSEILHQLTSRmIELSPPGDRNTFmRGSSLEKAFLAFEmAHYPTKAEEHFNSTRVRTEFPGENDIDNLKAVILNPIIAFFQS 153
                            |       10        20        30        40        50      | 60        70        80  |     90     | 100       110       120       130       140       150   
                            |                                                      57-MSE                    83-MSE       96-MSE       110-MSE                                       
                            1-MSE                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:153
                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qn8 B   1 mPLTQTQRLINTYGASLKNGTISNEELIILLDPNTFTKSEGYVDPNAPVSDSNHSKmDAIKDFVLTIGPTLDSEILHQLTSRmIELSPPGDRNTFmRGSSLEKAFLAFEmAHYPTKAEEHFNSTRVRTEFPGENDIDNLKAVILNPIIAFFQS 153
                            |       10        20        30        40        50      | 60        70        80  |     90     | 100       110       120       130       140       150   
                            1-MSE                                                  57-MSE                    83-MSE       96-MSE       110-MSE                                       


Chain C from PDB  Type:PROTEIN  Length:149
                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh...hhhhhhhhhh..................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qn8 C   1 mPLTQTQRLINTYGASLKNGTISNEELIILLDPNTFTKSDPNAPVSDSNHSKmDAIKDFVLTIGPTLDSEILHQLTSRmIELSPPGDRNTFmRGSSLEKAFLAFEmAHYPTKAEEHFNSTRVRTEFPGENDIDNLKAVILNPIIAFFQS 153
                            |       10        20        30        44        54  |     64        74        84        94 |     104     | 114       124       134       144         
                            1-MSE                                39|           57-MSE                    83-MSE       96-MSE       110-MSE                                       
                                                                  44
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QN8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QN8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QN8)

(-) Gene Ontology  (0, 0)

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