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(-) Description

Title :  CRYSTAL STRUCTURE OF JUVENILE HORMONE EPOXIDE HYDROLASE FROM THE SILKWORM BOMBYX MORI
 
Authors :  K. Zhou, N. Jia, C. Hu, Y. L. Jiang, J. P. Yang, Y. Chen, S. Li, C. Z. Zhou
Date :  11 Jun 14  (Deposition) - 03 Sep 14  (Release) - 03 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Alpha/Beta Hydrolase, Epoxide Hydrolase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Zhou, N. Jia, C. Hu, Y. L. Jiang, J. P. Yang, Y. Chen, S. Li, W. F. Li, C. Z. Zhou
Crystal Structure Of Juvenile Hormone Epoxide Hydrolase Fro The Silkworm Bombyx Mori
Proteins 2014
PubMed-ID: 25143157  |  Reference-DOI: 10.1002/PROT.24676

(-) Compounds

Molecule 1 - JUVENILE HORMONE EPOXIDE HYDROLASE
    Chains: A, B
    EC Number: 3.3.2.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET29A
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 23-461
    Mutation: YES
    Organism Common: SILK MOTH, SILKWORM
    Organism Scientific: BOMBYX MORI
    Organism Taxid: 7091
    Synonym: BOMMO-JHEH

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
11PE2Ligand/IonPENTAETHYLENE GLYCOL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:300 , PHE A:377 , SER A:379BINDING SITE FOR RESIDUE 1PE A 501
2AC2SOFTWARETHR B:304 , SER B:378 , SER B:379BINDING SITE FOR RESIDUE 1PE B 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QLA)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Trp A:154 -Pro A:155
2Tyr A:283 -Pro A:284
3Gly A:342 -Gly A:343
4Trp B:154 -Pro B:155
5Gly B:342 -Gly B:343

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QLA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QLA)

(-) Exons   (0, 0)

(no "Exon" information available for 4QLA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:424
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhh.....eee....hhhhhhhhhhhhhh.................hhhhhhhhhhhhhhh.hhhhhhhhhh...eeeeee..eeeeeeee........eeeeeeee.....hhhhhhhhhhhhh.......eeeeeeee................hhhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhhhhhh....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh.........hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...........eeeee........hhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qla A  33 LDLEEWWGPPELKQKQDTSIKPFEITFSETMVKELKERIKKRRPFAPPLEGVGFKYGFNSKQLDSWLKYWAEEYPFAERQKFLNQYPHFKTNIQGLNIHFMRITPKVPKGVEIVPLLLLHGWPGSVREFYEAIPHLTAVSKDRNFALEIIAPSLPGYGFSDAAVRPGLAAAEVAVIFKNLMARLGYKQYYVQGGDWGALIGSAMATFFPKEIIGFHSNMALTLSPAATFLEFVGALFPSLIVEPELANRLYPLSEKYSTLLEELGYMHIQATKPDTVGIGLTDSPAGLLAYILEKFSTWTNPDLRSKEDGGLSYRWTKDQLIDNLMLYWSTKSIVTSMRLYAESFSSRHFDLKLDEIQVQVPTWVLQAKHELAYQPPCILKMKYPKLVNASVIEDGGHFLAFELPEIFAKDVLKAIGEFRKLKN 456
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452    


Chain B from PDB  Type:PROTEIN  Length:380
                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh.......eee....hhhhhhhhhhhhhh.................hhhhhhhhhhhhhhh.hhhhhhhhhh...eeeeee..eeeeeeee........eeeeeeee.....hhhhhh.hhhhhh.......eeeeeeee................hhhhhhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh.........hhhhhhhhhhhhhh..hhhhhhhhhhhhh...........eeeeee.......hhhhhhhhh..eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qla B  33 LDLEEWWGPPELKQKQDTSIKPFEITFSETMVKELKERIKKRRPFAPPLEGVGFKYGFNSKQLDSWLKYWAEEYPFAERQKFLNQYPHFKTNIQGLNIHFMRITPKVPKGVEIVPLLLLHGWPGSVREFYEAIPHLTAVSKDRNFALEIIAPSLPGYGFSDAAVRPGLAAAEVAVIFKNLMARLGYKQYYVQGGDWGALIGSAMATFFPKEIIGFHSNMATLLEELGYMHIQATKPDTVGIGLTDSPAGLLAYILEKFSTWTNPDLRSKEDGGLSYRWTKDQLIDNLMLYWSTKSIVTSMRLYAESFSSRHFIQVQVPTWVLQAKHELAYQPPCILKMKYPKLVNASVIEDGGHFLAFELPEIFAKDVLKAIGEFRKLKN 456
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252|      300       310       320       330       340       350       360       370       380 ||    396       406       416       426       436       446       456
                                                                                                                                                                                                                                                     252|                                                                                        382|                                                                   
                                                                                                                                                                                                                                                      291                                                                                         389
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QLA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QLA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QLA)

(-) Gene Ontology  (10, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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    Gly B:342 - Gly B:343   [ RasMol ]  
    Trp A:154 - Pro A:155   [ RasMol ]  
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