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(-) Description

Title :  X-RAY STRUCTURE OF THE ROQ DOMAIN FROM MURINE ROQUIN-1
 
Authors :  R. Janowski, A. Schlundt, M. Sattler, D. Niessing
Date :  30 May 14  (Deposition) - 16 Jul 14  (Release) - 20 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.94
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Roq Domain, Winged-Helix Domain, Rna Binding, Tnf Cde Rna, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Schlundt, G. A. Heinz, R. Janowski, A. Geerlof, R. Stehle, V. Heissmeyer, D. Niessing, M. Sattler
Structural Basis For Rna Recognition In Roquin-Mediated Post-Transcriptional Gene Regulation.
Nat. Struct. Mol. Biol. V. 21 671 2014
PubMed-ID: 25026077  |  Reference-DOI: 10.1038/NSMB.2855

(-) Compounds

Molecule 1 - ROQUIN-1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 DE3
    Expression System Taxid: 469008
    Expression System Vector Type: PETTRX1A
    Fragment: ROQ DOMAIN
    Gene: GM551, KIAA2025, RC3H1
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: ROQUIN, PROTEIN SANROQUE, RING FINGER AND C3H ZINC FINGER PROTEIN 1, RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1EDO-1Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:251 , SER A:312 , SER A:315 , HOH A:597 , HOH A:612 , HOH A:666BINDING SITE FOR RESIDUE EDO A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QI0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4QI0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QI0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QI0)

(-) Exons   (0, 0)

(no "Exon" information available for 4QI0)

(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:153
                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh....eehhhhhhhhhhhhh......hhhhhhhhhhhhhhh..eeeeee..eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qi0 A 174 QNPQQLSSNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAPDQWSSLLYGDQSHKSHMQSIIDKLQT 326
                                   183       193       203       213       223       233       243       253       263       273       283       293       303       313       323   


Chain B from PDB  Type:PROTEIN  Length:162
                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh....eehhhhhhhhhhhhh......hhhhhhhhhhhhhhh..eeee.......eeee.hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4qi0 B 165 TVTELILQHQNPQQLSSNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAPDQWSSLLYGDQSHKSHMQSIIDKLQT 326
                                   174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QI0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QI0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QI0)

(-) Gene Ontology  (34, 34)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        RC3H1_MOUSE | Q4VGL6: 4qi2 4txa 5f5f 5f5h

(-) Related Entries Specified in the PDB File

4qi2 X-RAY STRUCTURE OF THE ROQ DOMAIN FROM MURINE ROQUIN-1 IN COMPLEX WITH A 23-MER TNF-CDE RNA