4QHT - JenaLib

Title :   CRYSTAL STRUCTURE OF AAA+/ SIGMA 54 ACTIVATOR DOMAIN OF THE FLAGELLAR REGULATORY PROTEIN FLRC FROM VIBRIO CHOLERAE IN ATP ANALOG BOUND STATE

Authors :   S. Dey, M. Biswas, U. Sen, J. Dasgupta

Date :   29 May 14 (Deposition) - 16 Jul 14 (Release) - 14 Oct 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.56

Chains :   Asym./Biol. Unit : A,B,C,D,E,F,G

Keywords :   Aaa+ Atpase Domain, Atp Hydrolysis, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Dey, M. Biswas, U. Sen, J. Dasgupta
Unique Atpase Site Architecture Triggers Cis-Mediated Synchronized Atp Binding In Heptameric Aaa+-Atpase Domain O Flagellar Regulatory Protein Flrc
J. Biol. Chem. V. 290 8734 2015
PubMed-ID: 25688103 | Reference-DOI: 10.1074/JBC.M114.611434

Compounds

Molecule 1 - FLAGELLAR REGULATORY PROTEIN C
	Chains	:	A, B, C, D, E, F, G
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A+
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 132-381
	Gene	:	FLRC
	Organism Scientific	:	VIBRIO CHOLERAE
	Organism Taxid	:	345073
	Strain	:	O395

Structural Features

Chains, Units

		1	2	3	4	5	6	7
Asymmetric/Biological Unit	:	A	B	C	D	E	F	G

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (3, 26)

Asymmetric/Biological Unit (3, 26)

No.	Name	Count	Type	Full Name
1	ANP	7	Ligand/Ion	PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2	EDO	12	Ligand/Ion	1,2-ETHANEDIOL
3	MG	7	Ligand/Ion	MAGNESIUM ION

Sites (26, 26)

Asymmetric Unit (26, 26)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	MET A:131 , VAL A:132 , PRO A:160 , SER A:161 , GLY A:162 , SER A:163 , GLY A:164 , LYS A:165 , GLU A:166 , VAL A:167 , ASN A:272 , LEU A:312 , ARG A:319 , VAL A:348 , ARG A:349 , MG A:402 , HOH A:501 , HOH A:522 , HOH A:531 , HOH A:551	BINDING SITE FOR RESIDUE ANP A 401
02	AC2	SOFTWARE	ASN A:187 , ASP A:230 , ANP A:401 , HOH A:531 , HOH A:547	BINDING SITE FOR RESIDUE MG A 402
03	AC3	SOFTWARE	ARG A:285 , GLU A:286 , ASP A:287 , HOH A:545	BINDING SITE FOR RESIDUE EDO A 403
04	AC4	SOFTWARE	VAL A:265 , HOH A:507	BINDING SITE FOR RESIDUE EDO A 404
05	AC5	SOFTWARE	MET B:131 , VAL B:132 , SER B:161 , GLY B:162 , SER B:163 , GLY B:164 , LYS B:165 , GLU B:166 , VAL B:167 , GLU B:231 , ASN B:272 , LEU B:312 , ARG B:319 , VAL B:348 , ARG B:349 , MG B:402 , HOH B:501 , HOH B:511 , HOH B:543	BINDING SITE FOR RESIDUE ANP B 401
06	AC6	SOFTWARE	ASP B:230 , GLU B:231 , ANP B:401 , HOH B:501	BINDING SITE FOR RESIDUE MG B 402
07	AC7	SOFTWARE	LEU B:247 , ARG B:250 , VAL B:265	BINDING SITE FOR RESIDUE EDO B 403
08	AC8	SOFTWARE	MET C:131 , VAL C:132 , SER C:161 , GLY C:162 , SER C:163 , GLY C:164 , LYS C:165 , GLU C:166 , VAL C:167 , GLU C:231 , ASN C:272 , LEU C:312 , ARG C:319 , VAL C:348 , ARG C:349 , MG C:402 , HOH C:528 , HOH C:531 , HOH C:532 , HOH C:533 , HOH C:551	BINDING SITE FOR RESIDUE ANP C 401
09	AC9	SOFTWARE	ASN C:187 , ASP C:230 , GLU C:231 , ANP C:401 , HOH C:551	BINDING SITE FOR RESIDUE MG C 402
10	BC1	SOFTWARE	ARG C:285 , GLU C:286 , ASP C:287 , HOH C:535 , HOH C:569	BINDING SITE FOR RESIDUE EDO C 403
11	BC2	SOFTWARE	MET D:131 , VAL D:132 , PRO D:160 , SER D:161 , GLY D:162 , SER D:163 , GLY D:164 , LYS D:165 , GLU D:166 , VAL D:167 , ASN D:272 , LEU D:312 , HIS D:315 , ARG D:319 , VAL D:348 , ARG D:349 , MG D:402 , HOH D:533 , HOH D:538 , HOH D:548	BINDING SITE FOR RESIDUE ANP D 401
12	BC3	SOFTWARE	ASP D:230 , ANP D:401 , HOH D:538	BINDING SITE FOR RESIDUE MG D 402
13	BC4	SOFTWARE	ARG D:285 , GLU D:286 , ASP D:287 , HOH D:536	BINDING SITE FOR RESIDUE EDO D 403
14	BC5	SOFTWARE	ASN D:154 , LEU D:247 , ARG D:250 , VAL D:265 , HOH D:504	BINDING SITE FOR RESIDUE EDO D 404
15	BC6	SOFTWARE	MET E:131 , VAL E:132 , PRO E:160 , SER E:161 , GLY E:162 , SER E:163 , GLY E:164 , LYS E:165 , GLU E:166 , VAL E:167 , ASN E:272 , LEU E:312 , HIS E:315 , ARG E:319 , VAL E:348 , ARG E:349 , MG E:402 , HOH E:510 , HOH E:535 , HOH E:564	BINDING SITE FOR RESIDUE ANP E 401
16	BC7	SOFTWARE	ASN E:187 , ASP E:230 , ANP E:401 , HOH E:510	BINDING SITE FOR RESIDUE MG E 402
17	BC8	SOFTWARE	ARG E:285 , GLU E:286	BINDING SITE FOR RESIDUE EDO E 403
18	BC9	SOFTWARE	LEU E:247 , ARG E:250 , VAL E:265	BINDING SITE FOR RESIDUE EDO E 404
19	CC1	SOFTWARE	MET F:131 , VAL F:132 , SER F:161 , GLY F:162 , SER F:163 , GLY F:164 , LYS F:165 , GLU F:166 , VAL F:167 , ASN F:272 , LEU F:312 , ARG F:319 , VAL F:348 , ARG F:349 , MG F:402 , HOH F:501 , HOH F:522 , HOH F:525 , HOH F:530	BINDING SITE FOR RESIDUE ANP F 401
20	CC2	SOFTWARE	ASP F:230 , ANP F:401 , HOH F:522 , HOH F:530	BINDING SITE FOR RESIDUE MG F 402
21	CC3	SOFTWARE	HOH E:564 , ARG F:285 , GLU F:286 , ASP F:287	BINDING SITE FOR RESIDUE EDO F 403
22	CC4	SOFTWARE	LEU F:247 , ARG F:250 , VAL F:265	BINDING SITE FOR RESIDUE EDO F 404
23	CC5	SOFTWARE	HIS G:130 , MET G:131 , VAL G:132 , SER G:161 , GLY G:162 , SER G:163 , GLY G:164 , LYS G:165 , GLU G:166 , VAL G:167 , ASN G:272 , LEU G:312 , ARG G:319 , VAL G:348 , ARG G:349 , MG G:402 , HOH G:534 , HOH G:535 , HOH G:547	BINDING SITE FOR RESIDUE ANP G 401
24	CC6	SOFTWARE	ASP G:230 , ANP G:401 , HOH G:534	BINDING SITE FOR RESIDUE MG G 402
25	CC7	SOFTWARE	ARG G:285 , GLU G:286 , HOH G:539 , HOH G:540	BINDING SITE FOR RESIDUE EDO G 403
26	CC8	SOFTWARE	ARG G:250 , VAL G:265	BINDING SITE FOR RESIDUE EDO G 404

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhh......eeeee........hhhhhhee...........eehhhhhh...eeeee.hhhhhhhhhhhhhhhhhhheee......eee...eeeee...hhhhhhhh...hhhhhhhhh.eeee..hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh....hhhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4qht A 130 HMVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILSENGHIQSEHILLE 375
                                   139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369

Chain B from PDB  Type:PROTEIN  Length:245
                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhh......eeeee...hhhhhhhhhhhee...........eehhhhhh...eeeeehhhhhhhhhhhhhhhhhhhheee......eee...eeeee...hhhhhhhh...hhhhhhhhh.eeee..hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhh....hhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qht B 130 HMVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILSENGHIQSEHILL 374
                                   139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369

Chain C from PDB  Type:PROTEIN  Length:248
                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhh......eeeee...hhhhhhhhhhhee...........eehhhhhh...eeeeehhhhhhhhhhhhhhhhhhhhee........ee...eeeeee..hhhhhhhh...hhhhhhhhh.eeee..hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh....hhhhhhhhhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qht C 130 HMVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILSENGHIQSEHILLEGV 377
                                   139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369

Chain D from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhh......eeeee...hhhhhhhhhhhee...........eehhhhhh...eeeeehhhhhhhhhhhhhhhhhhhhee........ee...eeeeee..hhhhhhhh...hhhhhhhhh..eee..hhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhh....hhhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4qht D 130 HMVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILSENGHIQSEHILLE 375
                                   139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369

Chain E from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhh......eeeee...hhhhhhhhhhhee...........eehhhhhh...eeeeehhhhhhhhhhhhhhhhhhhhee........ee...eeeee...hhhhhhhh...hhhhhhhhh..eee..hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh....hhhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4qht E 130 HMVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILSENGHIQSEHILLE 375
                                   139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369

Chain F from PDB  Type:PROTEIN  Length:245
                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhh......eeeee...hhhhhhhhhhhee...........eehhhhhh...eeeeehhhhhhhhhhhhhhhhhhhhee........ee...eeeeee..hhhhhhhh...hhhhhhhhh.eeee..hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhh....hhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qht F 130 HMVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILSENGHIQSEHILL 374
                                   139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369

Chain G from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhh......eeeee...hhhhhhhhhhhee...........eehhhhhh...eeeeehhhhhhhhhhhhhhhhhhhhee........ee...eeeeee..hhhhhhhh...hhhhhhhhh.eeee..hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh....hhhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4qht G 130 HMVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILSENGHIQSEHILLE 375
                                   139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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		Ile G:372 - Leu G:373	[ RasMol ]

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	4qht
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Description