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(-) Description

Title :  LC8 - ANA2 (159-168) COMPLEX
 
Authors :  L. K. Slevin, E. R. Romes, K. C. Slep
Date :  27 May 14  (Deposition) - 11 Jun 14  (Release) - 20 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.83
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Lc8 Fold Dimer, Target Dimerization, Ana2, Cellular, Motor Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. K. Slevin, E. M. Romes, M. G. Dandulakis, K. C. Slep
The Mechanism Of Dynein Light Chain Lc8-Mediated Oligomerization Of The Ana2 Centriole Duplication Factor.
J. Biol. Chem. V. 289 20727 2014
PubMed-ID: 24920673  |  Reference-DOI: 10.1074/JBC.M114.576041

(-) Compounds

Molecule 1 - DYNEIN LIGHT CHAIN 1, CYTOPLASMIC
    Chains: A, B, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-6P-2
    Expression System Strain: BL21 DE3
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: LC8
    Gene: CTP, CDLC1, DDLC1, CG6998
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227
    Synonym: 8 KDA DYNEIN LIGHT CHAIN, CUT UP PROTEIN
 
Molecule 2 - ANASTRAL SPINDLE 2
    Chains: C, D, G, H
    Engineered: YES
    Fragment: ANA2 T159-P168
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227
    Other Details: SEQUENCE T159-P168 OCCURS NATURALLY IN DROSOPHILA MELANOGASTER. PEPTIDE SYNTHESIZED IS NYTICAGTQTDP WITH C-TERMINAL AMIDE.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): ABCD    
Biological Unit 2 (1x):     EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4QH7)

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:9 , ARG A:60 , ASN A:61 , PHE A:62 , GLY A:63 , SER A:64 , TYR A:65 , VAL A:66 , THR A:67 , HIS A:68 , TYR A:75 , TYR A:77 , ALA A:82 , HOH A:101 , HOH A:106 , HOH A:140 , HOH A:181 , ILE B:34 , GLU B:35 , LYS B:36 , HOH B:161 , ASN C:1 , TYR C:2 , HOH C:202 , HOH C:203 , HOH C:204 , HOH C:205 , HOH C:207 , HOH C:210 , GLU E:16 , ASN E:33 , LYS E:49 , TYR E:50 , ARG E:60BINDING SITE FOR CHAIN C OF ANASTRAL SPINDLE 2
2AC2SOFTWAREILE A:34 , GLU A:35 , LYS A:36 , HOH A:136 , HOH A:157 , LYS B:9 , ARG B:60 , ASN B:61 , PHE B:62 , GLY B:63 , SER B:64 , TYR B:65 , VAL B:66 , THR B:67 , HIS B:68 , THR B:70 , TYR B:75 , TYR B:77 , HOH B:104 , TYR D:2 , HOH D:201 , HOH D:202 , HOH D:203 , HOH D:204 , HOH D:205 , HOH D:207 , HOH D:209 , HOH D:210 , HOH D:212 , HOH D:213 , HOH D:215 , HOH D:217BINDING SITE FOR CHAIN D OF ANASTRAL SPINDLE 2
3AC3SOFTWAREARG E:60 , ASN E:61 , PHE E:62 , GLY E:63 , SER E:64 , TYR E:65 , VAL E:66 , THR E:67 , HIS E:68 , TYR E:75 , TYR E:77 , HOH E:106 , HOH E:141 , HOH E:146 , ILE F:34 , GLU F:35 , LYS F:36 , ASN G:1 , TYR G:2 , HOH G:201 , HOH G:202 , HOH G:203 , HOH G:204 , HOH G:205 , HOH G:206 , HOH G:207 , HOH G:208 , HOH G:210BINDING SITE FOR CHAIN G OF ANASTRAL SPINDLE 2
4AC4SOFTWAREASN B:33 , ARG B:60 , VAL B:81 , HOH B:101 , HOH B:125 , TYR D:2 , ILE E:34 , GLU E:35 , LYS E:36 , LYS F:9 , ARG F:60 , ASN F:61 , PHE F:62 , GLY F:63 , SER F:64 , TYR F:65 , VAL F:66 , THR F:67 , HIS F:68 , THR F:70 , TYR F:75 , TYR F:77 , HOH F:101 , HOH F:102 , HOH F:158 , TYR H:2 , HOH H:201 , HOH H:202 , HOH H:203 , HOH H:205 , HOH H:206 , HOH H:207 , HOH H:208 , HOH H:209BINDING SITE FOR CHAIN H OF ANASTRAL SPINDLE 2

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QH7)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Pro A:52 -Thr A:53
2Pro B:52 -Thr B:53
3Pro E:52 -Thr E:53
4Pro F:52 -Thr F:53

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QH7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QH7)

(-) Exons   (0, 0)

(no "Exon" information available for 4QH7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:83
                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeehhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..eeeeeeeeeeeeeeee..eeeeeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------- Transcript
                 4qh7 A   6 AVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS  88
                                    15        25        35        45        55        65        75        85   


Chain B from PDB  Type:PROTEIN  Length:83
                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeehhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..eeeeeeeeeeeeeeee..eeeeeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------- Transcript
                 4qh7 B   6 AVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS  88
                                    15        25        35        45        55        65        75        85   


Chain C from PDB  Type:PROTEIN  Length:12
                                            
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author ..eeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                 4qh7 C   1 NYTICAGTQTDP 168
                             ||    166  
                             2|         
                            159         


Chain D from PDB  Type:PROTEIN  Length:10
                                          
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author .eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                 4qh7 D   2 YTICAGTQTD 167
                            ||     167
                            2|        
                           159        


Chain E from PDB  Type:PROTEIN  Length:83
                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..eeeeeeeeeeeeeeee...eeeeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------- Transcript
                 4qh7 E   6 AVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS  88
                                    15        25        35        45        55        65        75        85   


Chain F from PDB  Type:PROTEIN  Length:83
                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeehhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..eeeeeeeeeeeeeeee..eeeeeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------- Transcript
                 4qh7 F   6 AVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS  88
                                    15        25        35        45        55        65        75        85   


Chain G from PDB  Type:PROTEIN  Length:11
                                           
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author ..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                 4qh7 G   1 NYTICAGTQTD 167
                             ||    166 
                             2|        
                            159        


Chain H from PDB  Type:PROTEIN  Length:11
                                           
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author .eeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                 4qh7 H   2 YTICAGTQTDP 168
                            ||     167 
                            2|         
                           159
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QH7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QH7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QH7)

(-) Gene Ontology  (37, 40)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DYL1_DROME | Q24117: 1rhw 2p2t 2pg1 3bri 3brl 3dvh 3dvp 3dvt 3e2b 3fm7 3glw 4qh8 5e0l 5e0m
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(-) Related Entries Specified in the PDB File

4qh8