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(-) Description

Title :  CRYSTAL STRUCTURE OF A DEGT DNRJ ERYC1 STRS AMINOTRANSFERASE FROM BRUCELLA ABORTUS
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  23 May 14  (Deposition) - 18 Jun 14  (Release) - 18 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A,B
Keywords :  National Institute Of Allergy And Infectious Diseases, Niaid, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Structural Genomics, Amino Transferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. E. Edwards, J. W. Fairman, J. J. Letesson, Seattle Structural Genomics Center For Infectious Disease
Crystal Structure Of A Degt Dnrj Eryc1 Strs Family Protein From Bartonella Abortus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DEGT/DNRJ/ERYC1/STRS AMINOTRANSFERASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PBG1861
    Gene: BAB1_1616
    Organism Scientific: BRUCELLA ABORTUS 2308
    Organism Taxid: 359391
    Strain: 2308

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2MG1Ligand/IonMAGNESIUM ION
3PLP2Ligand/IonPYRIDOXAL-5'-PHOSPHATE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:512 , HOH A:514 , HOH A:529 , HOH B:508 , HOH B:509 , HOH B:514BINDING SITE FOR RESIDUE MG A 401
2AC2SOFTWAREPHE A:218 , ARG A:236 , HOH A:908 , TYR B:188 , PLP B:402BINDING SITE FOR RESIDUE ACT A 402
3AC3SOFTWAREASN A:57 , GLY A:58 , THR A:59 , PHE A:84 , ASP A:162 , ALA A:164 , GLN A:165 , SER A:186 , LYS A:191 , HOH A:525 , HOH A:614 , ASN B:234 , ACT B:401BINDING SITE FOR RESIDUE PLP A 403
4AC4SOFTWARETYR A:188 , PLP A:403 , PHE B:218 , ARG B:236 , HOH B:773BINDING SITE FOR RESIDUE ACT B 401
5AC5SOFTWAREASN A:234 , ACT A:402 , ASN B:57 , GLY B:58 , THR B:59 , PHE B:84 , ASP B:162 , ALA B:164 , GLN B:165 , SER B:186 , LYS B:191 , HOH B:534 , HOH B:553BINDING SITE FOR RESIDUE PLP B 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QGR)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Tyr A:314 -Tyr A:315
2Tyr B:314 -Tyr B:315

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QGR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QGR)

(-) Exons   (0, 0)

(no "Exon" information available for 4QGR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:376
                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhh.....eeeeee....hhhhhhhhhh..eeeee.........hhhhhhhhhhhhhhhh..eeeee...hhhhh..hhhhhhhhhhhhh.eeeee.......ee..ee......eeeee.............eeeee.hhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........ee.....eeee..hhhhhhhhhhhh..........hhhhh......ee....hhhhhhh...eeee......hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qgr A  -2 HHHMQFIDLGAQRARIENRLNAAISKVVAEGRYILGPEVAEFEKKLGEYLGVEHVIACANGTDALQMPLMTRGIGPGHAVFVPSFTFAATAEVVALVGAEPVFVDVDPDSYNMNVEQLEAAIAATIKEGRLEPKAIIPVDLFGLAASYNRITAIAEREGLFIIEDAAQSIGGKRDNVMCGAFGHVGATSFYPAKPLGCYGDGGAMFTNDAELADTLRSVLFHGKGETQYDNVRIGINSRLDTIQAAVLLEKLAILEDEMEARDRIARRYNEALKDVVKVPELPAGNRSAWAQYSIESENRDGLKAQLQAEGIPSVIYYVKPLHLQTAYKHYSVAPGGLPVSESLPSRILSLPMHPYLSEADQDKIIGVIRGFHGKK 373
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367      


Chain B from PDB  Type:PROTEIN  Length:373
                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhh.....eeeeee....hhhhhhhhhh..eeeee.........hhhhhhhhhhhhhhhh..eeeee...hhhhh..hhhhhhhhhhhhh.eeeee.......ee..ee......eeeee.............eeeee.hhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........ee.....eeee..hhhhhhhhhhhh..........hhhhh............hhhhhhh...eeee......hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qgr B   0 HMQFIDLGAQRARIENRLNAAISKVVAEGRYILGPEVAEFEKKLGEYLGVEHVIACANGTDALQMPLMTRGIGPGHAVFVPSFTFAATAEVVALVGAEPVFVDVDPDSYNMNVEQLEAAIAATIKEGRLEPKAIIPVDLFGLAASYNRITAIAEREGLFIIEDAAQSIGGKRDNVMCGAFGHVGATSFYPAKPLGCYGDGGAMFTNDAELADTLRSVLFHGKGETQYDNVRIGINSRLDTIQAAVLLEKLAILEDEMEARDRIARRYNEALKDVVKVPELPAGNRSAWAQYSIESENRDGLKAQLQAEGIPSVIYYVKPLHLQTAYKHYSVAPGGLPVSESLPSRILSLPMHPYLSEADQDKIIGVIRGFHGK 372
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QGR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QGR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QGR)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Tyr A:314 - Tyr A:315   [ RasMol ]  
    Tyr B:314 - Tyr B:315   [ RasMol ]  
 

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