4QF5 - JenaLib

Title :   CRYSTAL STRUCTURE I OF MURF FROM ACINETOBACTER BAUMANNII

Authors :   Y. J. An, C. S. Jeong, S. S. Cha

Date :   19 May 14 (Deposition) - 01 Apr 15 (Release) - 01 Apr 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Udp-N-Acetylmuramoyl-Tripeptide-D-Alanyl-D-Ananine Ligase, Murf, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. S. Cha, Y. J. An, C. S. Jeong, J. H. Yu, K. M. Chung
Atp-Binding Mode Including A Carbamoylated Lysine And Two Mg(2+) Ions, And Substrate-Binding Mode In Acinetobacter Baumannii Murf
Biochem. Biophys. Res. Commun. V. 450 1045 2014
PubMed-ID: 24978312 | Reference-DOI: 10.1016/J.BBRC.2014.06.108

Compounds

Molecule 1 - UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE
	Chains	:	A, B
	EC Number	:	6.3.2.10
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PRSET-A
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	ABBFA_000315
	Organism Scientific	:	ACINETOBACTER BAUMANNII
	Organism Taxid	:	557600
	Strain	:	AB307-0294

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (3, 8)

Asymmetric Unit (3, 8)

No.	Name	Count	Type	Full Name
1	ATP	2	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
2	KCX	2	Mod. Amino Acid	LYSINE NZ-CARBOXYLIC ACID
3	MG	4	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	ATP	1	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
2	KCX	1	Mod. Amino Acid	LYSINE NZ-CARBOXYLIC ACID
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	ATP	1	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
2	KCX	1	Mod. Amino Acid	LYSINE NZ-CARBOXYLIC ACID
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Sites (6, 6)

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:123 , GLY A:124 , LYS A:125 , THR A:126 , THR A:127 , ASN A:150 , GLU A:172 , ASN A:197 , HIS A:292 , ASN A:296 , ARG A:327 , LEU A:328 , ASP A:341 , ASN A:344 , SER A:349 , LYS A:448 , MG A:502 , MG A:503	BINDING SITE FOR RESIDUE ATP A 501
2	AC2	SOFTWARE	THR A:126 , ASN A:150 , GLU A:172 , ATP A:501	BINDING SITE FOR RESIDUE MG A 502
3	AC3	SOFTWARE	HIS A:202 , KCX A:216 , ATP A:501	BINDING SITE FOR RESIDUE MG A 503
4	AC4	SOFTWARE	SER B:123 , GLY B:124 , LYS B:125 , THR B:126 , THR B:127 , ASN B:150 , GLU B:172 , ASN B:197 , HIS B:292 , ASN B:296 , ARG B:327 , ASP B:341 , ASN B:344 , SER B:349 , ALA B:352 , LYS B:448 , MG B:502 , MG B:503	BINDING SITE FOR RESIDUE ATP B 501
5	AC5	SOFTWARE	THR B:126 , ASN B:150 , GLU B:172 , ATP B:501	BINDING SITE FOR RESIDUE MG B 502
6	AC6	SOFTWARE	HIS B:202 , KCX B:216 , ATP B:501	BINDING SITE FOR RESIDUE MG B 503

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:459
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh.ee.hhh.......eee.........eeee.......hhhhhhhhhhhh...eeee........eeee..hhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhhhhhhh....eee........hhhhhhhh.......eeeee......hhhhhhhhhhh..eeee......hhhhhhhhhhhhhhhhhhhh......eeeee....hhhhhhhhh...eeeee......eeeeeeee..eeeeeeee..eeeeeee...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhh........eeeee..eeeeee....hhhhhhhhhhhhhh...eeeeeee.......hhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhh.eeee.hhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qf5 A   7 STVPLEPWTAQQLQQATQGYWHKDQIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVVANGCQVAIVERPIDAEIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIGTAHLGEFGGRDGICRAkSEIYRHILPQGVAIVPQQDDFTAEIREAAKSHQIMSFGEGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFALALGVSLEDIVKGLEQAQGAKGRLNFIQKAPHLFIDDTYNANPTSMRAAAQVLLQQNGIKVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKLKAFQTQAEALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 465
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456         
                                                                                                                                                                                                                                           216-KCX

Chain B from PDB  Type:PROTEIN  Length:453
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhh.ee.hhh.......eee.........eeee.......hhhhhhhhhhhh...eeee........eeee..hhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhhhhhhhh...eee........hhhhhhhh.......eeeee......hhhhhhhhhhh..eeee......hhhhhhhhhhhhhhhhhhhh......eeeee....hhhhhhhhh...eeeee......eeeeeeee..eeeeeeee..eeeeeee...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhh........eeeee..eeeeee....hhhhhhhhhhhhhh...eeeeeee....hhhhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhh..eeee.hhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qf5 B   9 VPLEPWTAQQLQQATQGYWHKDQIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVVANGCQVAIVERPIDAEIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIGTAHLGEFGGRDGICRAkSEIYRHILPQGVAIVPQQDDFTAEIREAAKSHQIMSFGEGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFALALGVSLEDIVKGLEQAQGAKGRLNFIQKAPHLFIDDTYNANPTSMRAAAQVLLQQNGIKVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGATKLKAFQTQAEALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 465
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408  ||   422       432       442       452       462   
                                                                                                                                                                                                                                         216-KCX                                                                                                                                                                                            411|                                                 
                                                                                                                                                                                                                                                                                                                                                                                                                                             416

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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