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(-) Description

Title :  CRYSTAL STRUCTURE OF 3-KETOSTEROID-9-ALPHA-HYDROXYLASE 5 (KSHA5) FROM R. RHODOCHROUS IN COMPLEX WITH FE2/S2 (INORGANIC) CLUSTER
 
Authors :  J. Penfield, L. J. Worrall, N. C. Strynadka, L. D. Eltis
Date :  13 May 14  (Deposition) - 30 Jul 14  (Release) - 01 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Mixed Function Oxygenases, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. S. Penfield, L. J. Worrall, N. C. Strynadka, L. D. Eltis
Substrate Specificities And Conformational Flexibility Of 3-Ketosteroid 9 Alpha-Hydroxylases.
J. Biol. Chem. V. 289 25523 2014
PubMed-ID: 25049233  |  Reference-DOI: 10.1074/JBC.M114.575886

(-) Compounds

Molecule 1 - 3-KETOSTEROID 9ALPHA-HYDROXYLASE OXYGENASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: GJ1158
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: KSHA, KSHA5
    Organism Scientific: RHODOCOCCUS RHODOCHROUS
    Organism Taxid: 1829

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 6)

Asymmetric Unit (6, 6)
No.NameCountTypeFull Name
1ASD1Ligand/Ion4-ANDROSTENE-3-17-DIONE
2FE1Ligand/IonFE (III) ION
3FES1Ligand/IonFE2/S2 (INORGANIC) CLUSTER
4GOL1Ligand/IonGLYCEROL
5PG41Ligand/IonTETRAETHYLENE GLYCOL
6SO41Ligand/IonSULFATE ION
Biological Unit 1 (5, 15)
No.NameCountTypeFull Name
1ASD3Ligand/Ion4-ANDROSTENE-3-17-DIONE
2FE-1Ligand/IonFE (III) ION
3FES3Ligand/IonFE2/S2 (INORGANIC) CLUSTER
4GOL3Ligand/IonGLYCEROL
5PG43Ligand/IonTETRAETHYLENE GLYCOL
6SO43Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:73 , HIS A:75 , MET A:76 , GLY A:78 , CYS A:92 , PHE A:94 , HIS A:95 , TRP A:97BINDING SITE FOR RESIDUE FES A 401
2AC2SOFTWAREASN A:181 , HIS A:187 , HIS A:192 , ASP A:311 , HOH A:776BINDING SITE FOR RESIDUE FE A 402
3AC3SOFTWARELYS A:86 , GLY A:87 , ASP A:88 , SER A:89 , HOH A:585 , HOH A:715BINDING SITE FOR RESIDUE SO4 A 403
4AC4SOFTWAREASN A:181 , VAL A:182 , PHE A:188 , HIS A:192 , GLN A:210 , MET A:212 , LEU A:233 , ALA A:237 , MET A:245 , ASP A:247 , LEU A:262 , ASN A:264 , HOH A:518 , HOH A:776BINDING SITE FOR RESIDUE ASD A 404
5AC5SOFTWAREGLU A:159 , THR A:209 , TYR A:211 , LYS A:283 , HOH A:538 , HOH A:767BINDING SITE FOR RESIDUE GOL A 405
6AC6SOFTWARELEU A:326 , SER A:327 , ASP A:330 , GLY A:331 , GLN A:335 , PHE A:360 , HOH A:710 , HOH A:711 , HOH A:730BINDING SITE FOR RESIDUE PG4 A 406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QDC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4QDC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QDC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QDC)

(-) Exons   (0, 0)

(no "Exon" information available for 4QDC)

(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:369
                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeeeeeehhhhh....eeeee..eeeeeee.....eeeee........hhhhheee..eee......eee....eee.................eeee..eeeeee...........................eeeeeeee...hhhhhhhhhhhhhhhhh..eeeeeeeeeee..eeeeeeeeee.....hhhhh.....eeeeeeeee...eeeeeeeeee..eeeeeeeeeeeeeee..eeeeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhh.eeeee.hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qdc A  15 EIREIQAAAAPTRFARGWHCLGLLRDFQDGKPHSIEAFGTKLVVFADSKGQLNVLDAYCRHMGGDLSRGEVKGDSIACPFHDWRWNGKGKCTDIPYARRVPPIAKTRAWTTLERNGQLYVWNDPQGNPPPEDVTIPEIAGYGTDEWTDWSWKSLRIKGSHCREIVDNVVDMAHFFYIHYSFPRYFKNVFEGHTATQYMHSTGREDVISGTNYDDPNAELRSEATYFGPSYMIDWLESDANGQTIETILINCHYPVSNNEFVLQYGAIVKKLPGVSDEIAAGMAEQFAEGVQLGFEQDVEIWKNKAPIDNPLLSEEDGPVYQLRRWYQQFYVDVEDITEDMTKRFEFEIDTTRAVASWQKEVAENLAKQA 383
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QDC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QDC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QDC)

(-) Gene Ontology  (5, 5)

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  4qdc
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  KSHA5_RHORH | F1CMY8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KSHA5_RHORH | F1CMY8: 4qdd 4qdf

(-) Related Entries Specified in the PDB File

4qck 4qdd 4qdf