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(-) Description

Title :  CRYSTAL STRUCTURE OF THE COMPLEX OF PEPTIDYL-TRNA HYDROLASE FROM PSEUDOMONAS AERUGINOSA WITH AMINO ACYL-TRNA ANALOGUE AT 1.77 ANGSTROM RESOLUTION
 
Authors :  A. Singh, M. Sinha, A. Bhushan, P. Kaur, S. Sharma, T. P. Singh
Date :  08 May 14  (Deposition) - 28 May 14  (Release) - 12 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.77
Chains :  Asym./Biol. Unit :  A
Keywords :  Pth, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Singh, A. Kumar, L. Gautam, P. Sharma, M. Sinha, A. Bhushan, P. Kaur, S. Sharma, A. Arora, T. P. Singh
Structural And Binding Studies Of Peptidyl-Trna Hydrolase From Pseudomonas Aeruginosa Provide A Platform For The Structure-Based Inhibitor Design Against Peptidyl-Trna Hydrolase
Biochem. J. V. 463 329 2014
PubMed-ID: 25101795  |  Reference-DOI: 10.1042/BJ20140631

(-) Compounds

Molecule 1 - PEPTIDYL-TRNA HYDROLASE
    Chains: A
    EC Number: 3.1.1.29
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28+
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PA4672, PTH
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: PAO1
    Synonym: PTH

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
13NZ1Ligand/Ion3'-DEOXY-3'-[(O-METHYL-L-TYROSYL)AMINO]ADENOSINE
2GOL1Ligand/IonGLYCEROL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:95 , GLU A:96 , LEU A:97 , HIS A:112 , GLY A:113 , HIS A:115 , 3NZ A:202 , HOH A:423BINDING SITE FOR RESIDUE GOL A 201
2AC2SOFTWAREASN A:12 , TYR A:17 , HIS A:22 , MET A:69 , ASN A:70 , LEU A:97 , GLY A:113 , GLY A:114 , ASN A:116 , SER A:148 , VAL A:151 , LEU A:152 , ARG A:157 , SER A:158 , GLU A:161 , GOL A:201 , HOH A:308 , HOH A:423 , HOH A:479 , HOH A:499BINDING SITE FOR RESIDUE 3NZ A 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QBK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4QBK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QBK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QBK)

(-) Exons   (0, 0)

(no "Exon" information available for 4QBK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:194
                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee..........hhhhhhhhhhhhhhhhhh...eeehhh.eeeeeeee..eeeeeeee..hhhhhhhhhhhhhhhhh.hhh.eeeeeee.......eeeee......hhhhhhhhhhh......eeeeee.....hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qbk A   1 MTAVQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWTRAMQKLHSQKA 194
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QBK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QBK)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (4, 4)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PTH_PSEAE | Q9HVC3: 4dhw 4djj 4erx 4fno 4fyj 4jc4 4qaj 4qd3

(-) Related Entries Specified in the PDB File

4jc4 MODEL PDB