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Title :   CRYSTAL STRUCTURE OF A STABLE ADENYLATE KINASE VARIANT AKLSE6

Authors :   S. Moon, E. Bae

Date :   08 May 14 (Deposition) - 25 Jun 14 (Release) - 25 Jun 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.67

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Adenylate Kinase, Zinc Finger, Transferase Activity, Phosphotransferase Activity, Zinc Binding, Atp Binding, Phosphorylation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Moon, R. M. Bannen, T. J. Rutkoski, G. N. Phillips, E. Bae
Effectiveness And Limitations Of Local Structural Entropy Optimization In The Thermal Stabilization Of Mesophilic And Thermophilic Adenylate Kinases
Proteins V. 82 2014
PubMed: search | Reference-DOI: 10.1002/PROT.24627

Molecule 1 - ADENYLATE KINASE
	Chains	:	A, B
	EC Number	:	2.7.4.3
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	ADK
	Mutation	:	YES
	Organism Scientific	:	GEOBACILLUS STEAROTHERMOPHILUS
	Organism Taxid	:	1422
	Synonym	:	AK, ATP-AMP TRANSPHOSPHORYLASE, ATP/AMP PHOSPHOTRANSFERASE, ADENYLATE MONOPHOSPHATE KINASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 6)

No.	Name	Count	Type	Full Name
1	AP5	2	Ligand/Ion	BIS(ADENOSINE)-5'-PENTAPHOSPHATE
2	MG	2	Ligand/Ion	MAGNESIUM ION
3	ZN	2	Ligand/Ion	ZINC ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	AP5	1	Ligand/Ion	BIS(ADENOSINE)-5'-PENTAPHOSPHATE
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	AP5	1	Ligand/Ion	BIS(ADENOSINE)-5'-PENTAPHOSPHATE
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	CYS A:130 , CYS A:133 , CYS A:150 , CYS A:153	BINDING SITE FOR RESIDUE ZN A 301
2	AC2	SOFTWARE	AP5 A:303 , HOH A:674 , HOH A:675 , HOH A:676 , HOH A:677 , HOH A:678	BINDING SITE FOR RESIDUE MG A 302
3	AC3	SOFTWARE	LEU A:8 , PRO A:9 , GLY A:10 , ALA A:11 , GLY A:12 , LYS A:13 , GLY A:14 , THR A:15 , THR A:31 , GLY A:32 , ARG A:36 , MET A:53 , ASP A:57 , LEU A:58 , VAL A:59 , GLY A:85 , PHE A:86 , ARG A:88 , GLN A:92 , ARG A:123 , ARG A:127 , THR A:136 , TYR A:137 , HIS A:138 , PHE A:141 , ARG A:160 , ARG A:171 , GLY A:197 , GLN A:199 , ILE A:201 , MG A:302 , HOH A:413 , HOH A:425 , HOH A:428 , HOH A:440 , HOH A:483 , HOH A:515 , HOH A:675 , HOH A:676 , HOH A:678	BINDING SITE FOR RESIDUE AP5 A 303
4	AC4	SOFTWARE	CYS B:130 , CYS B:133 , CYS B:150 , CYS B:153	BINDING SITE FOR RESIDUE ZN B 301
5	AC5	SOFTWARE	AP5 B:303 , HOH B:652 , HOH B:653 , HOH B:654 , HOH B:655	BINDING SITE FOR RESIDUE MG B 302
6	AC6	SOFTWARE	PRO B:9 , GLY B:10 , ALA B:11 , GLY B:12 , LYS B:13 , GLY B:14 , THR B:15 , THR B:31 , GLY B:32 , ARG B:36 , ASP B:57 , VAL B:59 , THR B:64 , GLY B:85 , PHE B:86 , ARG B:88 , GLN B:92 , ARG B:123 , ARG B:127 , THR B:136 , TYR B:137 , HIS B:138 , PHE B:141 , ARG B:160 , ARG B:171 , GLN B:199 , ILE B:201 , MG B:302 , HOH B:410 , HOH B:412 , HOH B:427 , HOH B:437 , HOH B:440 , HOH B:462 , HOH B:652 , HOH B:654 , HOH B:655	BINDING SITE FOR RESIDUE AP5 B 303

(no "SS Bond" information available for 4QBI)

Asymmetric Unit

No.	Residues
1	Phe A:86	-	Pro A:87
2	Phe B:86	-	Pro B:87

(no "SAP(SNP)/Variant" information available for 4QBI)

(no "PROSITE Motif" information available for 4QBI)

(no "Exon" information available for 4QBI)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....hhhhhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhheeee.....eee..................ee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee...hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qbi A   1 MNLVLMGLPGAGKGTQAEKIVEAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLGKDDCERGFLLDGFPRTVAQAEALEEILEDIGRKIDYVIHIDVRQDVLMERLTGRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEETVAKRLEVNMKQMKPLLDFYEQKGYLRNVNGEQDIEKVFADVRELLGGLKR 217
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210

Chain B from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....hhhhhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhh.eeee.....eee..................ee.....hhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qbi B   1 MNLVLMGLPGAGKGTQAEKIVEAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLGKDDCERGFLLDGFPRTVAQAEALEEILEDIGRKIDYVIHIDVRQDVLMERLTGRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEETVAKRLEVNMKQMKPLLDFYEQKGYLRNVNGEQDIEKVFADVRELLGG 214
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4QBI)

(no "CATH Domain" information available for 4QBI)

(no "Pfam Domain" information available for 4QBI)

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		Phe A:86 - Pro A:87	[ RasMol ]
		Phe B:86 - Pro B:87	[ RasMol ]

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Description

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Ligands, Modified Residues, Ions (3, 6)

Sites (6, 6)

SS Bonds (0, 0)

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