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(-) Description

Title :  1.98 ANGSTROM CRYSTAL STRUCTURE OF PUTATIVE 5'-NUCLEOTIDASE FROM STAPHYLOCOCCUS AUREUS IN COMPLEX WITH ADENOSINE.
 
Authors :  G. Minasov, S. Nocadello, L. Shuvalova, I. Dubrovska, J. Winsor, F. Bag F. Falugi, M. Bottomley, G. Grandi, W. F. Anderson, Center For Struc Genomics Of Infectious Diseases (Csgid)
Date :  24 Apr 14  (Deposition) - 07 May 14  (Release) - 21 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.98
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Csgid, 5'-Nucleotidase, C-Terminal Domain, Phosphoesterase, Metal Ion Binding, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Minasov, S. Nocadello, L. Shuvalova, I. Dubrovska, J. Winsor, F. Bagnoli, F. Falugi, M. Bottomley, G. Grandi, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
1. 98 Angstrom Crystal Structure Of Putative 5'-Nucleotidase From Staphylococcus Aureus In Complex With Adenosine.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 5' NUCLEOTIDASE FAMILY PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET 15B
    Expression System Strain: BL21 MAGIC
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: PUTATIVE 5'-NUCLEOTIDASE
    Gene: SACOL0130, SAOUHSC_00107
    Organism Scientific: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS
    Organism Taxid: 93062
    Strain: NCTC 8325

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 14)

Asymmetric/Biological Unit (4, 14)
No.NameCountTypeFull Name
13D11Ligand/Ion(2R,3S,5R)-5-(6-AMINO-9H-PURIN-9-YL)-TETRAHYDRO-2-(HYDROXYMETHYL)FURAN-3-OL
2MG1Ligand/IonMAGNESIUM ION
3MN1Ligand/IonMANGANESE (II) ION
4MSE11Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:56 , ASN A:93 , HIS A:191 , HIS A:231 , MN A:602 , HOH A:764BINDING SITE FOR RESIDUE MG A 601
2AC2SOFTWAREASP A:11 , HIS A:13 , ASP A:56 , HIS A:233 , MG A:601 , HOH A:764 , HOH A:972BINDING SITE FOR RESIDUE MN A 602
3AC3SOFTWAREHIS A:94 , TRP A:154 , GLU A:210 , PHE A:370 , ASN A:372 , PHE A:416 , TYR A:461 , HOH A:764 , HOH A:809 , HOH A:843 , HOH A:972BINDING SITE FOR RESIDUE 3D1 A 603

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Q7F)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu A:410 -Pro A:411

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Q7F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Q7F)

(-) Exons   (0, 0)

(no "Exon" information available for 4Q7F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:510
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee.....................hhhhhhhhhhhhhh....eeeee.......hhhhhhhhhh...hhhhhhhhhhh...ee..hhhhhh.hhhhhhhhhhhh........eee..ee.....eeeeee..eeeeeeeee..hhhhh.hhhhhh.eee.hhhhhhhhhhhhhhhhh.eeeeeee....................hhhhhhhhhhhhh.eee......eeeeee..eeeeee.....eeeeeeeee.....eeeeeeeeee.........hhhhhhhhhhhhhhhh.eeee....ee....hhhhhh.hhhhhhhhhhhhhhhh..eeeee......ee..eeehhhhhhhh.....eeeeeeehhhhhhhhhhhhh.eeee..eeee.hhhh....hhhh.eeee..eeeee........eeeeee..ee.....eeeeeeehhhhh....hhhhh...eeeee..hhhhhhhhhhhhh.........eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4q7f A   2 SNIAFYVVSDVHGYIFPTDFTSRNQYQPmGLLLANHVIEQDRRQYDQSFKIDNGDFLQGSPFCNYLIAHSGSSQPLVDFYNRmAFDFGTLGNHEFNYGLPYLKDTLRRLNYPVLCANIYENDSTLTDNGVKYFQVGDQTVGVIGLTTQFIPHWEQPEHIQSLTFHSAFEILQQYLPEmKRHADIIVVCYHGGFEKDLESGTPTEVLTGENEGYAmLEAFSKDIDIFITGHQHRQIAERFKQTAVIQPGTRGTTVGRVVLSTDEYENLSVESCELLPVIDDSTFTIDEDDQHLRKQLEDWLDYEITTLPYDmTINHAFEARVAPHPFTNFmNYALLEKSDADVACTALFDSASGFKQVVTmRDVINNYPFPNTFKVLAVSGAKLKEAIERSAEYFDVKNDEVSVSADFLEPKPQHFNYDIYGGVSYTIHVGRPKGQRVSNmmIQGHAVDLKQTYTICVNNYRAVGGGQYDmYIDAPVVKDIQVEGAQLLIDFLSNNNLmRIPQVVDFKVEK 511
                                    11        21        31        41        51        61        71        81  |     91       101       111       121       131       141       151       161       171       181       191       201       211    |  221       231       241       251       261       271       281       291       301       311|      321       331       341       351       361       371       381       391       401       411       421       431       441|      451       461       471       481       491       501       511
                                                       30-MSE                                                84-MSE                                                                                        179-MSE                              216-MSE                                                                                         312-MSE            331-MSE                       361-MSE                                                                         441-MSE                       471-MSE                     499-MSE        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  442-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Q7F)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Q7F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Q7F)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Glu A:410 - Pro A:411   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q2G1L5_STAA8 | Q2G1L5: 3qfk

(-) Related Entries Specified in the PDB File

3qfk 2.05 ANGSTROM CRYSTAL STRUCTURE OF PUTATIVE 5'-NUCLEOTIDASE FROM STAPHYLOCOCCUS AUREUS IN COMPLEX WITH ALPHA- KETOGLUTARATE. RELATED ID: IDP91106 RELATED DB: TARGETTRACK