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(-) Description

Title :  CRYSTAL STRUCTURE OF A N-ACETYLMURAMOYL-L-ALANINE AMIDASE (BACUNI_02947) FROM BACTEROIDES UNIFORMIS ATCC 8492 AT 1.07 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  21 Apr 14  (Deposition) - 07 May 14  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.07
Chains :  Asym./Biol. Unit :  A
Keywords :  Pf07313 Family Protein, Duf 1460, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Hypothetical Protein (Bacuni_02947) From Bacteroides Uniformis Atcc 8492 At 1. 07 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: PB1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BACUNI_02947
    Organism Scientific: BACTEROIDES UNIFORMIS ATCC 8492
    Organism Taxid: 411479

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric/Biological Unit (3, 11)
No.NameCountTypeFull Name
1MSE7Mod. Amino AcidSELENOMETHIONINE
2NA3Ligand/IonSODIUM ION
3NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:62 , THR A:64 , ARG A:109 , HIS A:111 , MSE A:145 , TYR A:152 , HOH A:430 , HOH A:437 , HOH A:441 , HOH A:490 , HOH A:509 , HOH A:544 , HOH A:565 , HOH A:832 , HOH A:859 , HOH A:914 , HOH A:915 , HOH A:916 , HOH A:917 , HOH A:918 , HOH A:919BINDING SITE FOR RESIDUE NAG A 301
2AC2SOFTWARETHR A:203 , THR A:205 , LEU A:208 , HOH A:532 , HOH A:595 , HOH A:922BINDING SITE FOR RESIDUE NA A 302
3AC3SOFTWAREGLU A:138 , TYR A:179 , HOH A:716 , HOH A:732 , HOH A:772 , HOH A:802BINDING SITE FOR RESIDUE NA A 303
4AC4SOFTWAREHOH A:484 , HOH A:539 , HOH A:650 , HOH A:811 , HOH A:812 , HOH A:938BINDING SITE FOR RESIDUE NA A 304

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Q68)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4Q68)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Q68)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Q68)

(-) Exons   (0, 0)

(no "Exon" information available for 4Q68)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:235
                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..........................hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh..hhhhh..hhhhhhhhhhhh..eeehhhhhh..eee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee.ee.hhh............eeeeee......eeeeeeeeee..eeeeeeee....eeee...hhhhhhhh...eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q68 A   0 GQGGKDmLSNGIKYLDVPYVAHTLEADGPEELVINCDEVDCTTLVEYVLAETLTPKLSESAFADNLQKIRYRDGKIDGYTSRLHYIADWINNGVRNGFLQDVTGAmSPDTERLSISYmSSHPQLYKQLANSPENVAKmKKIEQSLSGKEVHYLPKAKLPADGLPWIKDGDIIAITTNTPGLDVAHmGIAFYADNKLLLVHASSTDKKVVVSKVPLSQmLKDNNKWTGIRVLRmKK 262
                            ||    | 32        42        52        62        72      ||87        97       107       117       127     | 137       147       157       167       177       187       197       207     | 217       227       237       247       257  |  
                            ||    |                                                79|                                             133-MSE     145-MSE             165-MSE                                         213-MSE                         245-MSE        260-MSE
                            0|    |                                                 85                                                                                                                                                                                 
                            24    |                                                                                                                                                                                                                                    
                                 29-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Q68)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Q68)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Q68)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4Q68)

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  4q68
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A7V5T8_BACUC | A7V5T8: 4h4j 4q5k

(-) Related Entries Specified in the PDB File

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