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(-) Description

Title :  CRYSTAL STRUCTURE OF A DUF4783 FAMILY PROTEIN (BACUNI_04292) FROM BACTEROIDES UNIFORMIS ATCC 8492 AT 1.27 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  15 Apr 14  (Deposition) - 16 Jul 14  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.27
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Cystatin-Like Fold, Duf4783, Pf16022 Family, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Hypothetical Protein (Bacuni_04292) From Bacteroides Uniformis Atcc 8492 At 1. 27 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Atcc: 8492
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDE5T
    Expression System Strain: PB1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 22-130
    Gene: BACUNI_04292
    Organism Scientific: BACTEROIDES UNIFORMIS
    Organism Taxid: 411479

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (9, 30)

Asymmetric Unit (9, 30)
No.NameCountTypeFull Name
17PG1Ligand/Ion2,5,8,11,14,17,20,23-OCTAOXAPENTACOSAN-25-OL
2CL9Ligand/IonCHLORIDE ION
3CSO2Mod. Amino AcidS-HYDROXYCYSTEINE
4EDO1Ligand/Ion1,2-ETHANEDIOL
5IOD9Ligand/IonIODIDE ION
6MSE4Mod. Amino AcidSELENOMETHIONINE
7NA1Ligand/IonSODIUM ION
8PG41Ligand/IonTETRAETHYLENE GLYCOL
9PGE2Ligand/IonTRIETHYLENE GLYCOL
Biological Unit 1 (5, 11)
No.NameCountTypeFull Name
17PG-1Ligand/Ion2,5,8,11,14,17,20,23-OCTAOXAPENTACOSAN-25-OL
2CL-1Ligand/IonCHLORIDE ION
3CSO1Mod. Amino AcidS-HYDROXYCYSTEINE
4EDO1Ligand/Ion1,2-ETHANEDIOL
5IOD5Ligand/IonIODIDE ION
6MSE2Mod. Amino AcidSELENOMETHIONINE
7NA-1Ligand/IonSODIUM ION
8PG4-1Ligand/IonTETRAETHYLENE GLYCOL
9PGE2Ligand/IonTRIETHYLENE GLYCOL
Biological Unit 2 (5, 9)
No.NameCountTypeFull Name
17PG1Ligand/Ion2,5,8,11,14,17,20,23-OCTAOXAPENTACOSAN-25-OL
2CL-1Ligand/IonCHLORIDE ION
3CSO1Mod. Amino AcidS-HYDROXYCYSTEINE
4EDO-1Ligand/Ion1,2-ETHANEDIOL
5IOD4Ligand/IonIODIDE ION
6MSE2Mod. Amino AcidSELENOMETHIONINE
7NA-1Ligand/IonSODIUM ION
8PG41Ligand/IonTETRAETHYLENE GLYCOL
9PGE-1Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (24, 24)

Asymmetric Unit (24, 24)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:83 , ILE A:97 , ARG A:106BINDING SITE FOR RESIDUE IOD A 201
02AC2SOFTWAREVAL A:24 , IOD A:205BINDING SITE FOR RESIDUE IOD A 202
03AC3SOFTWAREGLN A:85 , LYS A:87 , IOD A:205BINDING SITE FOR RESIDUE IOD A 203
04AC4SOFTWAREGLN B:85 , LYS B:87 , IOD B:202BINDING SITE FOR RESIDUE IOD A 204
05AC5SOFTWAREGLY A:86 , LYS A:87 , IOD A:202 , IOD A:203BINDING SITE FOR RESIDUE IOD A 205
06AC6SOFTWAREARG A:88 , SER A:91 , GLY A:92 , PHE A:93 , PHE A:110 , PHE A:111 , ARG A:112 , CL B:210BINDING SITE FOR RESIDUE PGE A 206
07AC7SOFTWAREARG A:106 , PHE A:110 , HOH A:321 , ARG B:106 , ARG B:124 , ASP B:126 , 7PG B:205BINDING SITE FOR RESIDUE PGE A 207
08AC8SOFTWAREASN A:74 , HOH A:306BINDING SITE FOR RESIDUE CL A 208
09AC9SOFTWAREVAL A:82 , CL A:210 , HOH A:325 , HOH A:353BINDING SITE FOR RESIDUE CL A 209
10BC1SOFTWARELYS A:33 , ASN A:81 , CL A:209BINDING SITE FOR RESIDUE CL A 210
11BC2SOFTWARETHR A:63BINDING SITE FOR RESIDUE CL A 211
12BC3SOFTWARELYS A:55 , ASP A:129 , LYS B:47 , ALA B:59 , ASP B:60BINDING SITE FOR RESIDUE EDO A 212
13BC4SOFTWAREIOD B:204BINDING SITE FOR RESIDUE IOD B 201
14BC5SOFTWAREIOD A:204 , GLY B:86BINDING SITE FOR RESIDUE IOD B 202
15BC6SOFTWAREHOH A:321 , ASN B:108 , GLN B:122BINDING SITE FOR RESIDUE IOD B 203
16BC7SOFTWAREIOD B:201BINDING SITE FOR RESIDUE IOD B 204
17BC8SOFTWAREASN A:83 , HIS A:84 , PHE A:93 , ARG A:106 , PGE A:207 , LYS B:87 , ARG B:88 , PHE B:93 , ARG B:106 , ASN B:108 , PHE B:110 , GLN B:122 , PG4 B:206BINDING SITE FOR RESIDUE 7PG B 205
18BC9SOFTWAREHIS A:84 , HIS B:84 , 7PG B:205 , NA B:212 , HOH B:322BINDING SITE FOR RESIDUE PG4 B 206
19CC1SOFTWAREASN B:74BINDING SITE FOR RESIDUE CL B 207
20CC2SOFTWAREASN B:83BINDING SITE FOR RESIDUE CL B 208
21CC3SOFTWAREVAL B:82 , HOH B:348 , HOH B:363 , HOH B:381BINDING SITE FOR RESIDUE CL B 209
22CC4SOFTWAREPGE A:206BINDING SITE FOR RESIDUE CL B 210
23CC5SOFTWAREVAL B:24 , TYR B:118BINDING SITE FOR RESIDUE CL B 211
24CC6SOFTWAREPG4 B:206BINDING SITE FOR RESIDUE NA B 212

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Q53)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Val A:24 -Pro A:25
2Val B:24 -Pro B:25

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Q53)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Q53)

(-) Exons   (0, 0)

(no "Exon" information available for 4Q53)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:108
                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh..eeeeeeeee..eeeeeehhhhhhhhhhhhhhh.eeeeeeeeeee...eeeeeeeeee..eeeeeeeeeeee..eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 4q53 A  23 NVPEGVIGAFKEGNSQELNKYLGDKVDLIIQNKSTHADKRTAEGTmAAFFSNHKVGSFNVNHQGKRDESGFVIGILmTANGNFRVNcFFRKVQNKYVIHQIRIDKTDE 130
                                    32        42        52        62     |  72        82        92      |102      |112       122        
                                                                        68-MSE                         99-MSE   109-CSO                 


Chain B from PDB  Type:PROTEIN  Length:109
                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhh.eeeeeeeee..eeeeeehhhhhhhhhhhhhhh.eeeeeeeeeeee..eeeeeeeeee..eeeeeeeeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 4q53 B   0 GQNVPEGVIGAFKEGNSQELNKYLGDKVDLIIQNKSTHADKRTAEGTmAAFFSNHKVGSFNVNHQGKRDESGFVIGILmTANGNFRVNcFFRKVQNKYVIHQIRIDKTD 129
                            ||      30        40        50        60       |70        80        90       100       110       120         
                            0|                                            68-MSE                         99-MSE   109-CSO                
                            22
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Q53)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Q53)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Q53)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4Q53)

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