Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF TS-DHFR FROM CRYPTOSPORIDIUM HOMINIS IN COMPLEX WITH NADPH, FDUMP AND 2-AMINO-4-OXO-4,7-DIHYDRO-PYRROLO[2,3-D]PYRIMIDINE-METHYL-PHENYL-L-GLUTAMIC ACID.
 
Authors :  V. P. Kumar, K. S. Anderson
Date :  01 Apr 14  (Deposition) - 15 Oct 14  (Release) - 15 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.78
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Biol. Unit 3:  E  (1x)
Keywords :  Bifunctional Enzyme, Transferase, Oxidoreductase, Transferase- Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. P. Kumar, J. A. Cisneros, K. M. Frey, A. Castellanos-Gonzalez, Y. Wang, A. Gangjee, A. C. White, W. L. Jorgensen, K. S. Anderson
Structural Studies Provide Clues For Analog Design Of Specific Inhibitors Of Cryptosporidium Hominis Thymidylate Synthase-Dihydrofolate Reductase.
Bioorg. Med. Chem. Lett. V. 24 4158 2014
PubMed-ID: 25127103  |  Reference-DOI: 10.1016/J.BMCL.2014.07.049

(-) Compounds

Molecule 1 - BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE
    Chains: A, B, C, D, E
    EC Number: 2.1.1.45, 1.5.1.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PTRC99A
    Expression System Strain: PA414
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: BIFUNCTIONAL THYMIDYLATE SYNTHASE-DIHYDROFOLATE REDUCTASE
    Gene: CHRO.40506, TS-DHFR
    Organism Scientific: CRYPTOSPORIDIUM HOMINIS
    Organism Taxid: 237895

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ABCDE
Biological Unit 1 (1x): A C  
Biological Unit 2 (1x):  B D 
Biological Unit 3 (1x):     E

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 20)

Asymmetric Unit (3, 20)
No.NameCountTypeFull Name
12XB10Ligand/IonN-{4-[(2-AMINO-4-HYDROXY-7H-PYRROLO[2,3-D]PYRIMIDIN-5-YL)METHYL]BENZOYL}-L-GLUTAMIC ACID
2NDP5Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
3UFP5Ligand/Ion5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
Biological Unit 1 (3, 8)
No.NameCountTypeFull Name
12XB4Ligand/IonN-{4-[(2-AMINO-4-HYDROXY-7H-PYRROLO[2,3-D]PYRIMIDIN-5-YL)METHYL]BENZOYL}-L-GLUTAMIC ACID
2NDP2Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
3UFP2Ligand/Ion5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
Biological Unit 2 (3, 8)
No.NameCountTypeFull Name
12XB4Ligand/IonN-{4-[(2-AMINO-4-HYDROXY-7H-PYRROLO[2,3-D]PYRIMIDIN-5-YL)METHYL]BENZOYL}-L-GLUTAMIC ACID
2NDP2Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
3UFP2Ligand/Ion5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
Biological Unit 3 (3, 4)
No.NameCountTypeFull Name
12XB2Ligand/IonN-{4-[(2-AMINO-4-HYDROXY-7H-PYRROLO[2,3-D]PYRIMIDIN-5-YL)METHYL]BENZOYL}-L-GLUTAMIC ACID
2NDP1Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
3UFP1Ligand/Ion5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREVAL A:10 , ALA A:11 , ILE A:19 , GLY A:23 , GLN A:24 , LEU A:25 , GLY A:55 , ARG A:56 , LYS A:57 , THR A:58 , ILE A:75 , SER A:76 , SER A:77 , SER A:78 , ARG A:92 , GLY A:114 , GLY A:115 , GLU A:116 , SER A:117 , THR A:145 , 2XB A:604BINDING SITE FOR RESIDUE NDP A 601
02AC2SOFTWAREARG A:257 , TYR A:342 , CYS A:402 , HIS A:403 , ARG A:423 , SER A:424 , CYS A:425 , ASP A:426 , GLY A:430 , ASN A:434 , HIS A:464 , TYR A:466 , 2XB A:603 , HOH A:704 , ARG C:382 , ARG C:383BINDING SITE FOR RESIDUE UFP A 602
03AC3SOFTWARESER A:290 , ILE A:315 , ASN A:319 , ASP A:426 , LEU A:429 , GLY A:430 , PHE A:433 , TYR A:466 , MET A:519 , ALA A:520 , UFP A:602BINDING SITE FOR RESIDUE 2XB A 603
04AC4SOFTWAREVAL A:9 , VAL A:10 , ALA A:11 , ASP A:32 , LYS A:34 , PHE A:36 , SER A:37 , ARG A:70 , CYS A:113 , THR A:134 , NDP A:601BINDING SITE FOR RESIDUE 2XB A 604
05AC5SOFTWAREVAL B:10 , ALA B:11 , ILE B:19 , GLY B:23 , GLN B:24 , LEU B:25 , GLY B:55 , ARG B:56 , LYS B:57 , THR B:58 , ILE B:75 , SER B:76 , SER B:77 , SER B:78 , ARG B:92 , GLY B:114 , GLY B:115 , GLU B:116 , SER B:117 , THR B:145 , 2XB B:604BINDING SITE FOR RESIDUE NDP B 601
06AC6SOFTWAREARG B:257 , TYR B:342 , CYS B:402 , HIS B:403 , ARG B:423 , SER B:424 , CYS B:425 , ASP B:426 , GLY B:430 , ASN B:434 , HIS B:464 , TYR B:466 , 2XB B:603 , ARG D:382 , ARG D:383BINDING SITE FOR RESIDUE UFP B 602
07AC7SOFTWARESER B:290 , ILE B:315 , ASN B:319 , ASP B:426 , LEU B:429 , GLY B:430 , PHE B:433 , TYR B:466 , MET B:519 , ALA B:520 , UFP B:602BINDING SITE FOR RESIDUE 2XB B 603
08AC8SOFTWAREVAL B:9 , VAL B:10 , ALA B:11 , ASP B:32 , LYS B:34 , PHE B:36 , SER B:37 , ARG B:70 , CYS B:113 , THR B:134 , NDP B:601BINDING SITE FOR RESIDUE 2XB B 604
09AC9SOFTWAREVAL C:10 , ALA C:11 , ILE C:19 , GLY C:23 , GLN C:24 , LEU C:25 , GLY C:55 , ARG C:56 , LYS C:57 , THR C:58 , ILE C:75 , SER C:76 , SER C:77 , SER C:78 , ARG C:92 , GLY C:114 , GLY C:115 , GLU C:116 , SER C:117 , THR C:145 , 2XB C:604BINDING SITE FOR RESIDUE NDP C 601
10BC1SOFTWAREARG A:382 , ARG A:383 , ARG C:257 , TYR C:342 , CYS C:402 , HIS C:403 , ARG C:423 , SER C:424 , CYS C:425 , ASP C:426 , ASN C:434 , HIS C:464 , TYR C:466 , 2XB C:603BINDING SITE FOR RESIDUE UFP C 602
11BC2SOFTWARESER C:290 , ILE C:315 , ASN C:319 , ASP C:426 , LEU C:429 , GLY C:430 , PHE C:433 , TYR C:466 , MET C:519 , ALA C:520 , UFP C:602BINDING SITE FOR RESIDUE 2XB C 603
12BC3SOFTWAREVAL C:9 , VAL C:10 , ALA C:11 , LEU C:25 , ASP C:32 , LYS C:34 , PHE C:36 , SER C:37 , ARG C:70 , CYS C:113 , THR C:134 , NDP C:601BINDING SITE FOR RESIDUE 2XB C 604
13BC4SOFTWAREVAL D:10 , ALA D:11 , ILE D:19 , GLY D:23 , GLN D:24 , LEU D:25 , GLY D:55 , ARG D:56 , LYS D:57 , THR D:58 , ILE D:75 , SER D:76 , SER D:77 , SER D:78 , ARG D:92 , GLY D:114 , GLY D:115 , GLU D:116 , SER D:117 , THR D:145 , 2XB D:604BINDING SITE FOR RESIDUE NDP D 601
14BC5SOFTWAREARG B:382 , ARG B:383 , ARG D:257 , TYR D:342 , CYS D:402 , HIS D:403 , ARG D:423 , SER D:424 , CYS D:425 , ASP D:426 , GLY D:430 , ASN D:434 , HIS D:464 , TYR D:466 , 2XB D:603BINDING SITE FOR RESIDUE UFP D 602
15BC6SOFTWARESER D:290 , ILE D:315 , ASN D:319 , ASP D:426 , LEU D:429 , GLY D:430 , PHE D:433 , TYR D:466 , MET D:519 , ALA D:520 , UFP D:602BINDING SITE FOR RESIDUE 2XB D 603
16BC7SOFTWAREVAL D:9 , VAL D:10 , ALA D:11 , ASP D:32 , LYS D:34 , PHE D:36 , SER D:37 , ARG D:70 , CYS D:113 , THR D:134 , NDP D:601BINDING SITE FOR RESIDUE 2XB D 604
17BC8SOFTWAREALA E:11 , ILE E:19 , GLY E:23 , GLN E:24 , GLY E:55 , ARG E:56 , LYS E:57 , THR E:58 , ILE E:75 , SER E:76 , SER E:77 , SER E:78 , ARG E:92 , GLY E:114 , GLY E:115 , GLU E:116 , SER E:117 , THR E:145 , 2XB E:604BINDING SITE FOR RESIDUE NDP E 601
18BC9SOFTWAREARG E:257 , TYR E:342 , CYS E:402 , HIS E:403 , ARG E:423 , SER E:424 , CYS E:425 , ASP E:426 , GLY E:430 , ASN E:434 , HIS E:464 , TYR E:466 , 2XB E:603BINDING SITE FOR RESIDUE UFP E 602
19CC1SOFTWARESER E:290 , ILE E:315 , ASN E:319 , ASP E:426 , LEU E:429 , GLY E:430 , PHE E:433 , TYR E:466 , MET E:519 , ALA E:520 , UFP E:602BINDING SITE FOR RESIDUE 2XB E 603
20CC2SOFTWAREVAL E:9 , VAL E:10 , ALA E:11 , ASP E:32 , LYS E:34 , PHE E:36 , SER E:37 , ARG E:70 , CYS E:113 , THR E:134 , NDP E:601BINDING SITE FOR RESIDUE 2XB E 604

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Q0E)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4Q0E)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Q0E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Q0E)

(-) Exons   (0, 0)

(no "Exon" information available for 4Q0E)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:505
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee....eee........hhhhhhhhhhhhhh......eeeeeeehhhhhhh.......eeeeee............eeee.hhhhhh........eeeeee..hhhhhhhhhhh....eeeeeee........ee.......eeeeee...eee..eeeeeeeeee..hhhhhhhhhhhhhh...hhhhhh...hhhhh............hhhhhhhhhhhhhhheee.......eeeeeeeeeeee.............hhhhhhhhhhhhhh...hhhhhhh..........hhhhhhhh..............hhhhhh.................hhhhhhhhhhhhh......eee...............eeeeeeee....eeeeeeeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeeeeee..hhhhhhhhh........eeee.....hhhhhhhh.eeee.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q0e A   3 EKNVSIVVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIGRRPLKNRIIVVISSSLPQDEADPNVVVFRNLEDSIENLMNDDSIENIFVCGGESIYRDALKDNFVDRIYLTRVALEDIEFDTYFPEIPETFLPVYMSQTFCTKNISYDFMIFEKQLKSIDDTVDLLGEIFGIRKMGNRHKFPKEEIYNTPSIRFGREHYEFQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVAIRSIFEELIWFIKGDTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMHDDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNCLSCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQLSRTPRPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 521
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172     ||196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516     
                                                                                                                                                                                                         178|                                                                                                                                                                                                                                                                                                                                        
                                                                                                                                                                                                          193                                                                                                                                                                                                                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:505
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee....eee........hhhhhhhhhhhhhh......eeeeeeehhhhhhh.......eeeeee............eeee.hhhhhh........eeeeee..hhhhhhhhhhh....eeeeeee........ee.......eeeeee...eee..eeeeeeeeee..hhhhhhhhhhhhhh...hhhhh....hhhhh............hhhhhhhhhhhhhhheee.......eeeeeeeeeeee.............hhhhhhhhhhhhhh...hhhhhhh..........hhhhhhhh..............hhhhhh.................hhhhhhhhhhhhh......eee...............eeeeeeee....eeeeeeeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeeeeee..hhhhhhhhh........eeee.....hhhhhhhh.eeee.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q0e B   3 EKNVSIVVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIGRRPLKNRIIVVISSSLPQDEADPNVVVFRNLEDSIENLMNDDSIENIFVCGGESIYRDALKDNFVDRIYLTRVALEDIEFDTYFPEIPETFLPVYMSQTFCTKNISYDFMIFEKQLKSIDDTVDLLGEIFGIRKMGNRHKFPKEEIYNTPSIRFGREHYEFQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVAIRSIFEELIWFIKGDTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMHDDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNCLSCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQLSRTPRPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 521
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172     ||196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516     
                                                                                                                                                                                                         178|                                                                                                                                                                                                                                                                                                                                        
                                                                                                                                                                                                          193                                                                                                                                                                                                                                                                                                                                        


Chain C from PDB  Type:PROTEIN  Length:505
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee....eee........hhhhhhhhhhhhhh......eeeeeeehhhhhhh.......eeeeee............eeee.hhhhhh........eeeeee..hhhhhhhhhhh....eeeeeee........ee.......eeeeee...eee..eeeeeeeeee..hhhhhhhhhhhhhh...hhhhh....hhhhh............hhhhhhhhhhhhhhheee.......eeeeeeeeeeee.............hhhhhhhhhhhhhh...hhhhhhh..........hhhhhhhh..............hhhhhh.................hhhhhhhhhhhhh......eee...............eeeeeeee....eeeeeeeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeeeeee..hhhhhhhhh........eeee.....hhhhhhhh.eeee.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q0e C   3 EKNVSIVVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIGRRPLKNRIIVVISSSLPQDEADPNVVVFRNLEDSIENLMNDDSIENIFVCGGESIYRDALKDNFVDRIYLTRVALEDIEFDTYFPEIPETFLPVYMSQTFCTKNISYDFMIFEKQLKSIDDTVDLLGEIFGIRKMGNRHKFPKEEIYNTPSIRFGREHYEFQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVAIRSIFEELIWFIKGDTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMHDDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNCLSCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQLSRTPRPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 521
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172     ||196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516     
                                                                                                                                                                                                         178|                                                                                                                                                                                                                                                                                                                                        
                                                                                                                                                                                                          193                                                                                                                                                                                                                                                                                                                                        


Chain D from PDB  Type:PROTEIN  Length:505
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee....eee........hhhhhhhhhhhhhh......eeeeeeehhhhhhh.......eeeeee............eeee.hhhhhh........eeeeee..hhhhhhhhhhh....eeeeeee........ee.......eeeeee...eee..eeeeeeeeee..hhhhhhhhhhhhhh...hhhhh....hhhhh............hhhhhhhhhhhhhhheee.......eeeeeeeeeeee.............hhhhhhhhhhhhhh...hhhhhhh..........hhhhhhhh..............hhhhhh.................hhhhhhhhhhhhh......eee...............eeeeeeee....eeeeeeeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeeeeee..hhhhhhhhh........eeee.....hhhhhhhh.eeee.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q0e D   3 EKNVSIVVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIGRRPLKNRIIVVISSSLPQDEADPNVVVFRNLEDSIENLMNDDSIENIFVCGGESIYRDALKDNFVDRIYLTRVALEDIEFDTYFPEIPETFLPVYMSQTFCTKNISYDFMIFEKQLKSIDDTVDLLGEIFGIRKMGNRHKFPKEEIYNTPSIRFGREHYEFQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVAIRSIFEELIWFIKGDTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMHDDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNCLSCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQLSRTPRPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 521
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172     ||196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516     
                                                                                                                                                                                                         178|                                                                                                                                                                                                                                                                                                                                        
                                                                                                                                                                                                          193                                                                                                                                                                                                                                                                                                                                        


Chain E from PDB  Type:PROTEIN  Length:505
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee....eee........hhhhhhhhhhhhhh......eeeeeeehhhhhhh.......eeeeee............eeee.hhhhhh........eeeeee..hhhhhhhhhhh....eeeeeee........ee.......eeeeee...eee..eeeeeeeeee..hhhhhhhhhhhhhh...hhhhh....hhhhh............hhhhhhhhhhhhhhheee.......eeeeeeeeeeee.............hhhhhhhhhhhhhh...hhhhhhh..........hhhhhhhh..............hhhhhh.................hhhhhhhhhhhhh......eee...............eeeeeeee....eeeeeeeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeeeeee..hhhhhhhhh........eeee.....hhhhhhhh.eeee.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q0e E   3 EKNVSIVVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIGRRPLKNRIIVVISSSLPQDEADPNVVVFRNLEDSIENLMNDDSIENIFVCGGESIYRDALKDNFVDRIYLTRVALEDIEFDTYFPEIPETFLPVYMSQTFCTKNISYDFMIFEKQLKSIDDTVDLLGEIFGIRKMGNRHKFPKEEIYNTPSIRFGREHYEFQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVAIRSIFEELIWFIKGDTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMHDDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNCLSCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQLSRTPRPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 521
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172     ||196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516     
                                                                                                                                                                                                         178|                                                                                                                                                                                                                                                                                                                                        
                                                                                                                                                                                                          193
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Q0E)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Q0E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Q0E)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4Q0E)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    2XB  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NDP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    UFP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4q0e)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4q0e
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  (no 'UniProt ID/Accession number' available) |
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProt
 
Access by Enzyme Classificator   (EC Number)
  1.5.1.3
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
  2.1.1.45
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  (no 'UniProt ID/Accession number' available) |
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 4Q0E)

(-) Related Entries Specified in the PDB File

1qzf 2oip 3dl5 3dl6 3hj3 4ky8