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(-) Description

Title :  SUBSTRATE-FREE STRUCTURE OF D-ALANINE CARRIER PROTEIN LIGASE DLTA FROM BACILLUS CEREUS
 
Authors :  L. Du, M. Atila, Y. Luo
Date :  31 Mar 14  (Deposition) - 26 Nov 14  (Release) - 26 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Homologous To Acetyl-Coa Synthetase, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Du, Y. Luo
Thiolation-Enhanced Substrate Recognition By D-Alanyl Carrier Protein Ligase Dlta From Bacillus Cereus.
F1000Res V. 3 106 2014
PubMed-ID: 25285205  |  Reference-DOI: 10.12688/F1000RESEARCH.4097.1

(-) Compounds

Molecule 1 - D-ALANINE--POLY(PHOSPHORIBITOL) LIGASE SUBUNIT 1
    Chains: A
    EC Number: 6.1.1.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: BC_1372, DLTA
    Organism Scientific: BACILLUS CEREUS
    Organism Taxid: 226900
    Strain: ATCC 14579 / DSM 31
    Synonym: D-ALANINE-D-ALANYL CARRIER PROTEIN LIGASE, DCL, D-ALANINE- ACTIVATING ENZYME, DAE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4PZP)

(-) Sites  (0, 0)

(no "Site" information available for 4PZP)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PZP)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PZP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PZP)

(-) Exons   (0, 0)

(no "Exon" information available for 4PZP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:464
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh...eeeee..eeeehhhhhhhhhhhhhhhhhhh......eeeee...hhhhhhhhhhhhh...eeeee...hhhhhhhhhhhh...eeee...........eeehhhhhhhhhhhh.....hhhhh.....eeeee....eeeehhhhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhh..eeee.hhhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhh.............eeee.....hhhhhhhhhhhh...eeeeee.hhhhh...eeee.hhhhhhhh.....eee....eeeee............eeeeee.............eeee..eeeeeeeeeeeee..eeee...hhhhhhh..eeeeeee...eeeeee......hhhhhhhhhhhhhh...hhhhh..eeee............hhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pzp A   1 AKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSKAFTMIDGERAYKTGDAGYVENGLLFYNGIEHHLRACSYVEGAVIVPILLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSE 501
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150 ||    167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357    || 372       382       392   ||  419       429  ||   447       457       467       477       487       497    
                                                                                                                                                                                 152|                                                                                                                                                                                                       362|                         396|               432|                                                            
                                                                                                                                                                                  160                                                                                                                                                                                                        368                          414                441
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PZP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PZP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PZP)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DLTA_BACCR | Q81G39: 3dhv 3fcc 3fce

(-) Related Entries Specified in the PDB File

3dhv THE SAME PROTEIN IN COMPLEX WITH D-ALANINE ADENYLATE
3fcc THE SAME PROTEIN IN COMPLEX WITH ATP AND MAGNESIUM ION
3fce THE SAME PROTEIN IN COMPLEX WITH ATP AND CALCIUM ION