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(-) Description

Title :  ZINC FINGER REGION OF MLL2 IN COMPLEX WITH CPG DNA
 
Authors :  X. Chao, W. Tempel, K. Liu, A. Dong, C. Bountra, J. Weigelt, C. H. Arrowsm A. M. Edwards, J. Min, Structural Genomics Consortium (Sgc)
Date :  31 Mar 14  (Deposition) - 04 Jun 14  (Release) - 04 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Zinc Finger, Dna-Binding, Structural Genomics, Structural Genomics Consortium, Sgc, Transcription-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Chao, W. Tempel, K. Liu, A. Dong, C. Bountra, J. Weigelt, C. H. Arrowsmith, A. M. Edwards, J. Min, Structural Genomics Consortium (Sgc)
Zinc Finger Region Of Mll2 In Complex With Cpg Dna
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HISTONE-LYSINE N-METHYLTRANSFERASE 2B
    Chains: A
    EC Number: 2.1.1.43
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28-MHL
    Expression System Strain: BL21(DE3)-V2R-PRARE2
    Expression System Taxid: 562
    Gene: KMT2B, HRX2, KIAA0304, MLL2, MLL4, TRX2, WBP7
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: LYSINE N-METHYLTRANSFERASE 2B, MYELOID/LYMPHOID OR MIXED- LINEAGE LEUKEMIA PROTEIN 4, TRITHORAX HOMOLOG 2, WW DOMAIN-BINDING PROTEIN 7, WBP-7
 
Molecule 2 - DNA (5'-D(*GP*CP*CP*AP*CP*CP*GP*GP*TP*GP*GP*C)-3')
    Chains: B, C
    Engineered: YES
    Other Details: SYNTHETIC DNA
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1UNX1Ligand/IonUNKNOWN ATOM OR ION
2ZN2Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:966 , CYS A:969 , CYS A:972 , CYS A:1005BINDING SITE FOR RESIDUE ZN A 1101
2AC2SOFTWARECYS A:978 , CYS A:981 , CYS A:984 , CYS A:1000BINDING SITE FOR RESIDUE ZN A 1102

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PZI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PZI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4PZI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:61
                                                                                              
               SCOP domains ------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhh......hhhhhhhhhhh........hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------- Transcript
                4pzi A  956 HHGKKMRMARCGHCRGCLRVQDCGSCVNCLDKPKFGGPNTKKQCCVYRKCDKIEARKMERL 1016
                                   965       975       985       995      1005      1015 


Chain B from PDB  Type:DNA  Length:12
                                             
                4pzi B    1 GCCACCGGTGGC   12
                                    10  


Chain C from PDB  Type:DNA  Length:12
                                             
                4pzi C    1 GCCACCGGTGGC   12
                                    10
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PZI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PZI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PZI)

(-) Gene Ontology  (25, 25)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        KMT2B_HUMAN | Q9UMN6: 3uvm 4erz

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