4PZG - JenaLib

Title :   CRYSTAL STRUCTURE OF HUMAN SORTING NEXIN 10 (SNX10)

Authors :   T. Xu, J. Xu, Q. Wang, J. Liu

Date :   30 Mar 14 (Deposition) - 24 Sep 14 (Release) - 03 Dec 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym./Biol. Unit : A,B

Keywords :   Sorting Nexin, Protein Transport, Phox-Homology Domain (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. Xu, J. Xu, Y. Ye, Q. Wang, X. Shu, D. Pei, J. Liu
Structure Of Human Snx10 Reveals Insights Into Its Role In Human Autosomal Recessive Osteopetrosis.
Proteins V. 82 3483 2014
PubMed-ID: 25212774 | Reference-DOI: 10.1002/PROT.24689

Compounds

Molecule 1 - SORTING NEXIN-10
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	SNX10
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

Structural Features

Chains, Units

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (2, 18)

Asymmetric/Biological Unit (2, 18)

No.	Name	Count	Type	Full Name
1	NO3	11	Ligand/Ion	NITRATE ION
2	PE5	7	Ligand/Ion	3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL

Sites (18, 18)

Asymmetric Unit (18, 18)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	MET A:45 , LYS A:46 , THR A:47 , ARG A:154 , MET B:45 , LYS B:46 , THR B:47 , ARG B:154	BINDING SITE FOR RESIDUE NO3 A 301
02	AC2	SOFTWARE	ASN A:84 , ASN A:87 , HIS A:90	BINDING SITE FOR RESIDUE NO3 A 302
03	AC3	SOFTWARE	ILE A:30 , ARG A:53 , TYR A:54 , ARG A:55 , ASN A:80	BINDING SITE FOR RESIDUE NO3 A 303
04	AC4	SOFTWARE	SER A:28 , LYS A:79 , ASN A:80 , LEU A:81 , PE5 A:308	BINDING SITE FOR RESIDUE NO3 A 304
05	AC5	SOFTWARE	ARG A:61 , GLN A:65	BINDING SITE FOR RESIDUE NO3 A 305
06	AC6	SOFTWARE	THR A:47 , SER A:48 , CYS A:49 , ASN A:153 , ARG A:154 , ARG B:154 , PHE B:156	BINDING SITE FOR RESIDUE PE5 A 306
07	AC7	SOFTWARE	HIS A:27 , ARG A:55 , TRP A:59	BINDING SITE FOR RESIDUE PE5 A 307
08	AC8	SOFTWARE	SER A:28 , ASN A:80 , LEU A:81 , PHE A:83 , NO3 A:304	BINDING SITE FOR RESIDUE PE5 A 308
09	AC9	SOFTWARE	GLU A:75 , LEU A:76 , SER A:78 , PE5 A:310	BINDING SITE FOR RESIDUE PE5 A 309
10	BC1	SOFTWARE	TRP A:26 , ARG A:61 , LEU A:76 , PE5 A:309	BINDING SITE FOR RESIDUE PE5 A 310
11	BC2	SOFTWARE	TYR B:54 , ARG B:55 , ASN B:80 , THR B:138 , LYS B:139 , TYR B:140 , NO3 B:304	BINDING SITE FOR RESIDUE NO3 B 301
12	BC3	SOFTWARE	TYR B:54 , PRO B:77 , SER B:78 , LYS B:79 , ASN B:80 , ARG B:94	BINDING SITE FOR RESIDUE NO3 B 302
13	BC4	SOFTWARE	TYR B:29 , ILE B:30 , PHE B:83 , MET B:85 , ARG B:94 , NO3 B:304	BINDING SITE FOR RESIDUE NO3 B 303
14	BC5	SOFTWARE	ARG B:53 , TYR B:54 , ARG B:55 , NO3 B:301 , NO3 B:303	BINDING SITE FOR RESIDUE NO3 B 304
15	BC6	SOFTWARE	ALA B:68 , LEU B:69 , LEU B:70 , ASN B:86 , ASN B:87 , ARG B:88	BINDING SITE FOR RESIDUE NO3 B 305
16	BC7	SOFTWARE	LEU B:81 , PHE B:82 , HIS B:124 , MET B:152	BINDING SITE FOR RESIDUE NO3 B 306
17	BC8	SOFTWARE	ARG B:61 , GLU B:75 , LEU B:76 , LYS B:139	BINDING SITE FOR RESIDUE PE5 B 307
18	BC9	SOFTWARE	ASN A:39 , GLU B:143 , HIS B:147 , LYS B:148	BINDING SITE FOR RESIDUE PE5 B 308

SS Bonds (2, 2)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:152
                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeee.......eeeeeeeeee........eeeeeehhhhhhhhhhhhhhhh..........hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.....hhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pzg A   8 EEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRYREFVWLRQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLFLQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEE 159
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157

Chain B from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeeeeeee...eeeeeeeeeeee........eeeeeeehhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.....hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4pzg B   8 EEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRYREFVWLRQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLFLQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFP 157
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (24, 24)

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