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(-) Description

Title :  THE CRYSTAL STRUCTURE OF A SOLUTE BINDING PROTEIN FROM BACILLUS ANTHRACIS STR. AMES IN COMPLEX WITH QUORUM-SENSING SIGNAL AUTOINDUCER-2 (AI-2)
 
Authors :  K. Tan, M. Gu, K. Kwon, W. F. Anderson, A. Joachimiak, Center For Struc Genomics Of Infectious Diseases (Csgid)
Date :  28 Mar 14  (Deposition) - 09 Apr 14  (Release) - 09 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.25
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, The Center For Structural Genomics Of Infectious Diseases, Csgid, Niaid, National Institute Of Allergy And Infectious Diseases, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, M. Gu, K. Kwon, W. F. Anderson, A. Joachimiak
The Crystal Structure Of A Solute Binding Protein From Bacillus Anthracis Str. Ames In Complex With Quorum-Sensing Signal Autoinducer-2 (Ai-2).
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SUGAR ABC TRANSPORTER, SUGAR-BINDING PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 27-347
    Gene: BA_2975, BAS2763, GBAA_2975
    Organism Common: ANTHRAX, ANTHRAX BACTERIUM
    Organism Scientific: BACILLUS ANTHRACIS
    Organism Taxid: 198094
    Strain: AMES
    Synonym: SOLUTE BINDING PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 16)

Asymmetric/Biological Unit (4, 16)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2EDO7Ligand/Ion1,2-ETHANEDIOL
3MSE7Mod. Amino AcidSELENOMETHIONINE
4PAV1Ligand/Ion(2R,4S)-2-METHYL-2,3,3,4-TETRAHYDROXYTETRAHYDROFURAN

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:41 , PHE A:47 , PHE A:48 , ASP A:122 , GLN A:136 , ASP A:171 , GLN A:172 , TRP A:175 , PRO A:225 , ASP A:226 , ALA A:227 , TRP A:272BINDING SITE FOR RESIDUE PAV A 401
2AC2SOFTWAREGLU A:333 , ARG A:334 , HOH A:513 , HOH A:808BINDING SITE FOR RESIDUE EDO A 402
3AC3SOFTWAREGLU A:148 , LYS A:152 , GLN A:268 , EDO A:404BINDING SITE FOR RESIDUE EDO A 403
4AC4SOFTWARELYS A:152 , GLN A:268 , THR A:338 , EDO A:403 , HOH A:790BINDING SITE FOR RESIDUE EDO A 404
5AC5SOFTWAREHOH A:723 , HOH A:730BINDING SITE FOR RESIDUE EDO A 405
6AC6SOFTWARELEU A:213 , PRO A:217 , HOH A:641BINDING SITE FOR RESIDUE EDO A 406
7AC7SOFTWAREGLU A:312 , HOH A:796BINDING SITE FOR RESIDUE EDO A 407
8AC8SOFTWAREASN A:255 , ARG A:258 , ASN A:346 , HOH A:812BINDING SITE FOR RESIDUE EDO A 408
9AC9SOFTWAREVAL A:247 , VAL A:248 , THR A:265BINDING SITE FOR RESIDUE CL A 409

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PZ0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PZ0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4PZ0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:321
                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4pz0a_ A: automated matches                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhh.eeeee.....hhhhhhhhhhhhhhhhhhh.eeee......hhhhhhhhhhhhhhh...eeee.......hhhhhhhhhhh..eeeee....hhhhh.eeee..hhhhhhhhhhhhhhhhhh..eeeeeee....hhhhhhhhhhhhhhhhhhh..eeeeeeee...hhhhhhhhhhhhhhhh....eeee...hhhhhhhhhhhhh......eeee..hhhhhhhhhhh.....eee.hhhhhhhhhhhhhhhhhh.........eeee...eeeeeehhhhhh........eeee....eee...hhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pz0 A  27 DKKKADDVKFAFIPKLTGVGFFTSGGEGAKEmGDKLGVQVKYDGPSEASVSGQVKYINNFINQNYDALmVSSTSVDGLSQSLQRAKKKGmTVLTWDSDVNPKDRSFYISQGTPDQLANLLIEmTSKQIGDKGKVAFFYSSPTVTDQNQWVTKAKEIIKEKYPNWEIVTTQYGENNAQKSLSVGENILKTYPDINAVICPDATALPAmAQAAENLKmDKKVVVTGFSTPNVmRDYVKRGTVQQFGLWDVKQQGALATYVANEIVVKGKKLKVGDSFEVKGIGKVKVEPNSIQGYDYEAEGNGIIVLPERVVFTKDNIDKYNF 347
                                    36        46        56 |      66        76        86        96       106       116       126       136       146  |    156       166       176       186       196       206       216       226      |236     | 246       256|      266       276       286       296       306       316       326       336       346 
                                                          58-MSE                               95-MSE              116-MSE                          149-MSE                                                                             233-MSE  242-MSE        257-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PZ0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PZ0)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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