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(-) Description

Title :  MOAC K51A IN COMPLEX WITH 3',8-CH2GTP
 
Authors :  N. K. Tonthat, B. M. Hover, K. Yokoyama, M. A. Schumacher
Date :  26 Mar 14  (Deposition) - 29 Apr 15  (Release) - 03 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.79
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Moac, Molybdenum Cofactor, Moco, Translation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. M. Hover, N. K. Tonthat, M. A. Schumacher, K. Yokoyama
Mechanism Of Pyranopterin Ring Formation In Molybdenum Cofactor Biosynthesis.
Proc. Natl. Acad. Sci. Usa V. 112 6347 2015
PubMed-ID: 25941396  |  Reference-DOI: 10.1073/PNAS.1500697112

(-) Compounds

Molecule 1 - MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN MOAC
    Chains: A
    Fragment: MOAC
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
12X31Ligand/Ion(8S)-3',8-CYCLO-7,8-DIHYDROGUANOSINE 5'-TRIPHOSPHATE
2EDO7Ligand/Ion1,2-ETHANEDIOL
Biological Unit 1 (2, 24)
No.NameCountTypeFull Name
12X33Ligand/Ion(8S)-3',8-CYCLO-7,8-DIHYDROGUANOSINE 5'-TRIPHOSPHATE
2EDO21Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:87 , GLN A:89 , ARG A:98 , GLU A:100 , HOH A:333BINDING SITE FOR RESIDUE EDO A 201
2AC2SOFTWAREALA A:146 , HOH A:309BINDING SITE FOR RESIDUE EDO A 202
3AC3SOFTWAREMET A:43 , MET A:129 , CYS A:130BINDING SITE FOR RESIDUE EDO A 203
4AC4SOFTWARELYS A:67 , LEU A:75 , CYS A:76 , HIS A:77 , PRO A:78 , LEU A:81 , HOH A:336BINDING SITE FOR RESIDUE EDO A 204
5AC5SOFTWAREARG A:96 , ARG A:143BINDING SITE FOR RESIDUE EDO A 205
6AC6SOFTWAREGLY A:140 , PRO A:141 , HOH A:339BINDING SITE FOR RESIDUE EDO A 206
7AC7SOFTWAREGLY A:52BINDING SITE FOR RESIDUE EDO A 207
8AC8SOFTWARELEU A:75 , CYS A:76 , HIS A:77 , LEU A:79 , THR A:109 , GLY A:110 , GLU A:112 , MET A:113 , GLU A:114 , HOH A:351BINDING SITE FOR RESIDUE 2X3 A 208

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PYA)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly A:140 -Pro A:141

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PYA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PYA)

(-) Exons   (0, 0)

(no "Exon" information available for 4PYA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:124
                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeee.hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.........eeeeeeeeehhh.eeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhh......eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pya A  23 ETVREARAEAFVTMRSETLAMIIDGRHHAGDVFATARIAGIQAAKRTWDLIPLCHPLMLSKVEVNLQAEPEHNRVRIETLCRLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIGPVRLLA 146
                                    32        42        52        62        72        82        92       102       112       122       132       142
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PYA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PYA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PYA)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)

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    Gly A:140 - Pro A:141   [ RasMol ]  
 
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  4pya
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  MOAC_ECOLI | P0A738
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MOAC_ECOLI | P0A738: 1ekr 1eks 4pyd

(-) Related Entries Specified in the PDB File

4pyd