4PXJ - JenaLib

Title :   CRYSTALLOGRAPHIC STRUCTURE OF THE LZII FRAGMENT (ANTI-PARALLEL ORIENTATION) FROM JIP3

Authors :   P. Llinas, Menetrey J.

Date :   24 Mar 14 (Deposition) - 10 Jun 15 (Release) - 20 Jul 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.06

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C  (2x)

Keywords :   Leucine Zipper, Scaffold Protein, Axonal Transport, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. Llinas, M. Chenon, T. Q. Nguyen, C. Moreira, A. De Regibus, A. Coquard, M. J. Ramos, R. Guerois, P. A. Fernandes, J. Menetrey
Structure Of A Truncated Form Of Leucine Zipper Ii Of Jip3 Reveals An Unexpected Antiparallel Coiled-Coil Arrangement.
Acta Crystallogr F Struct V. 72 198 2016 Biol Commun
PubMed-ID: 26919523 | Reference-DOI: 10.1107/S2053230X16001576

Compounds

Molecule 1 - C-JUN-AMINO-TERMINAL KINASE-INTERACTING PROTEIN 3
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PGST//1
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	LEUCINE ZIPPER II FRAGMENT
	Gene	:	MAPK8IP3, JIP3, KIAA1066
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	JIP-3, JNK-INTERACTING PROTEIN 3, JNK MAP KINASE SCAFFOLD PROTEIN 3, MITOGEN-ACTIVATED PROTEIN KINASE 8-INTERACTING PROTEIN 3

Structural Features

Chains, Units

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (2x)	:			C

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (3, 8)

Asymmetric Unit (3, 8)

No.	Name	Count	Type	Full Name
1	EDO	4	Ligand/Ion	1,2-ETHANEDIOL
2	GAI	2	Ligand/Ion	GUANIDINE
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 7)

No.	Name	Count	Type	Full Name
1	EDO	4	Ligand/Ion	1,2-ETHANEDIOL
2	GAI	2	Ligand/Ion	GUANIDINE
3	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	EDO	-1	Ligand/Ion	1,2-ETHANEDIOL
2	GAI	-1	Ligand/Ion	GUANIDINE
3	SO4	2	Ligand/Ion	SULFATE ION

Sites (8, 8)

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:475 , GAI B:501	BINDING SITE FOR RESIDUE SO4 A 501
2	AC2	SOFTWARE	ASN A:442 , ASN C:474	BINDING SITE FOR RESIDUE EDO A 502
3	AC3	SOFTWARE	ARG A:459	BINDING SITE FOR RESIDUE EDO A 503
4	AC4	SOFTWARE	GLN A:455 , ARG A:459 , HOH A:670 , LYS B:469 , HOH B:627 , HOH B:634	BINDING SITE FOR RESIDUE EDO A 504
5	AC5	SOFTWARE	SO4 A:501 , ASP B:443 , LEU B:444 , LYS B:447 , HOH C:669	BINDING SITE FOR RESIDUE GAI B 501
6	AC6	SOFTWARE	ASN B:442 , ASP B:443 , ARG B:485 , HOH B:648 , HOH B:651	BINDING SITE FOR RESIDUE GAI B 502
7	AC7	SOFTWARE	LYS A:469 , GLN B:455 , ARG B:459 , HOH B:603 , HOH B:650	BINDING SITE FOR RESIDUE EDO B 503
8	AC8	SOFTWARE	LYS C:447 , ARG C:475 , HOH C:662 , HOH C:664	BINDING SITE FOR RESIDUE SO4 C 501

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:56
                                                                                        
               SCOP domains -------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------- Transcript
                 4pxj A 430 PEFTKNALNVVKNDLIAKVDQLSGEQEVLRGELEAAKQAKVKLENRIKELEEELKR 485
                                   439       449       459       469       479

Chain B from PDB  Type:PROTEIN  Length:57
                                                                                         
               SCOP domains --------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------- Transcript
                 4pxj B 430 PEFTKNALNVVKNDLIAKVDQLSGEQEVLRGELEAAKQAKVKLENRIKELEEELKRV 486
                                   439       449       459       469       479

Chain C from PDB  Type:PROTEIN  Length:61
                                                                                             
               SCOP domains ------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------- Transcript
                 4pxj C 426 GAMDPEFTKNALNVVKNDLIAKVDQLSGEQEVLRGELEAAKQAKVKLENRIKELEEELKRV 486
                                   435       445       455       465       475       485

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (26, 26)

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