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(-) Description

Title :  THE CRYSTAL STRUCTURE OF ATUAH IN COMPLEX WITH GLYOXYLATE
 
Authors :  I. Shin, S. Rhee
Date :  23 Mar 14  (Deposition) - 23 Jul 14  (Release) - 23 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.45
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Amidase, Hydantoinase, Carbarmoylase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Shin, K. Han, S. Rhee
Structural Insights Into The Substrate Specificity Of (S)-Ureidoglycolate Amidohydrolase And Its Comparison With Allantoate Amidohydrolase
J. Mol. Biol. 2014
PubMed-ID: 25020232  |  Reference-DOI: 10.1016/J.JMB.2014.06.017

(-) Compounds

Molecule 1 - UREIDOGLYCOLATE HYDROLASE
    Chains: A, B
    EC Number: 3.5.3.19
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 50-476
    Gene: UAH, AAH2, AT5G43600, K9D7.10
    Organism Common: MOUSE-EAR CRESS, THALE-CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Synonym: ATUAH, ALLANTOATE AMIDOHYDROLASE 2, ATAHH2, UREIDOGLYCOLATE AMIDOHYDROLASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1GLV2Ligand/IonGLYOXYLIC ACID
2MN4Ligand/IonMANGANESE (II) ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:138 , ASP A:149 , HIS A:254 , HOH A:608 , HOH A:621 , HOH A:648BINDING SITE FOR RESIDUE MN A 501
2AC2SOFTWAREASP A:149 , GLU A:184 , HIS A:448 , GLV A:503 , HOH A:621 , HOH B:615BINDING SITE FOR RESIDUE MN A 502
3AC3SOFTWAREGLU A:183 , GLU A:184 , ARG A:353 , ALA A:422 , TYR A:423 , HIS A:448 , MN A:502 , HOH A:621 , HIS B:290 , ASN B:340BINDING SITE FOR RESIDUE GLV A 503
4AC4SOFTWAREHIS B:138 , ASP B:149 , HIS B:254 , HOH B:621 , HOH B:638 , HOH B:672BINDING SITE FOR RESIDUE MN B 501
5AC5SOFTWAREHOH A:1238 , ASP B:149 , GLU B:184 , HIS B:448 , GLV B:503 , HOH B:638BINDING SITE FOR RESIDUE MN B 502
6AC6SOFTWAREHIS A:290 , ASN A:340 , GLU B:183 , GLU B:184 , ARG B:353 , ALA B:422 , TYR B:423 , HIS B:448 , MN B:502 , HOH B:638BINDING SITE FOR RESIDUE GLV B 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PXE)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Ser A:81 -Pro A:82
2His A:335 -Pro A:336
3Ser B:81 -Pro B:82
4His B:335 -Pro B:336

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PXE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PXE)

(-) Exons   (0, 0)

(no "Exon" information available for 4PXE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:423
                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh..hhhhhhhhhhhhhh........eee...hhhhhhhhhhhhhhhhhh..eeee.....eeeee........eeeeee...eeeee....hhhhhhhhhhhhhhhhhh.......eeeee............hhhhhhhh.hhhhhhhhhhh.......hhhhhhhhh.........hhhhh.....eeeeeeeee...hhhhhhh..eeeeeee.eeeeeeeeee...ee....hhhhh.hhhhhhhhhhhhhhhhhhh......eeeeeeeeee.....ee..eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeee...ee.hhhhhhhhhhhhhhh...eeeeee...hhhhhhh....eeeeee.hhhhh........hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pxe A  54 NLASSLSVDAPGLQNQIDELSSFSDAPSPSVTRVLYTDKDVSARRYVKNLMALAGLTVREDAVGNIFGKWDGLEPNLPAVATGSHIDAIPYSGKYDGVVGVLGAIEAINVLKRSGFKPKRSLEIILFTSEEPTRFGISCLGSRLLAGSKELAEALKTTVVDGQNVSFIEAARSAGYAEDKDDDLSSVFLKKGSYFAFLELHIEQGPILEDEGLDIGVVTAIAAPASLKVEFEGNGGHAGAVLMPYRNDAGLAAAELALAVEKHVLESESIDTVGTVGILELHPGAINSIPSKSHLEIDTRDIDEARRNTVIKKIQESANTIAKKRKVKLSEFKIVNQDPPALSDKLVIKKMAEAATELNLSHKMMISRAYHDSLFMARISPMGMIFIPCYKGYSHKPEEYSSPEDMANGVKVLSLTLAKLSLD 476
                                    63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473   


Chain B from PDB  Type:PROTEIN  Length:423
                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh..hhhhhhhhhhhhhh........eee...hhhhhhhhhhhhhhhhhh..eeee.....eeeee........eeeeee...eeeee....hhhhhhhhhhhhhhhhhh.......eeeee............hhhhhhhh.hhhhhhhhhhh.......hhhhhhhhh.........hhhhh.....eeeeeeeee...hhhhhhh..eeeeeee.eeeeeeeeee...ee....hhhhh.hhhhhhhhhhhhhhhhhhh......eeeeeeeeee.....ee..eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeee...ee.hhhhhhhhhhhhhhh...eeeeee....hhhhhh....eeeeee.hhhhh........hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pxe B  54 NLASSLSVDAPGLQNQIDELSSFSDAPSPSVTRVLYTDKDVSARRYVKNLMALAGLTVREDAVGNIFGKWDGLEPNLPAVATGSHIDAIPYSGKYDGVVGVLGAIEAINVLKRSGFKPKRSLEIILFTSEEPTRFGISCLGSRLLAGSKELAEALKTTVVDGQNVSFIEAARSAGYAEDKDDDLSSVFLKKGSYFAFLELHIEQGPILEDEGLDIGVVTAIAAPASLKVEFEGNGGHAGAVLMPYRNDAGLAAAELALAVEKHVLESESIDTVGTVGILELHPGAINSIPSKSHLEIDTRDIDEARRNTVIKKIQESANTIAKKRKVKLSEFKIVNQDPPALSDKLVIKKMAEAATELNLSHKMMISRAYHDSLFMARISPMGMIFIPCYKGYSHKPEEYSSPEDMANGVKVLSLTLAKLSLD 476
                                    63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PXE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PXE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PXE)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        UAH_ARATH | Q8VXY9: 4pxb 4pxc

(-) Related Entries Specified in the PDB File

4pxb 4pxc 4pxd