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(-) Description

Title :  PROLINE AMINOPEPTIDASE P II FROM YERSINIA PESTIS
 
Authors :  J. Osipiuk, N. Maltseva, S. Shatsman, W. F. Anderson, A. Joachimiak, Ce Structural Genomics Of Infectious Diseases (Csgid)
Date :  14 Mar 14  (Deposition) - 02 Apr 14  (Release) - 02 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.76
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Idp00418, Exopeptidase, Niaid, National Institute Of Allergy And Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Csgid, Proline Aminopeptidase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Osipiuk, N. Maltseva, S. Shatsman, W. F. Anderson, A. Joachimiak
Proline Aminopeptidase P Ii From Yersinia Pestis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROLINE AMINOPEPTIDASE P II
    Chains: A, B
    EC Number: 3.4.11.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG28
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PEPP, PEPP2, Y3297, YPO0910, YP_3607
    Organism Scientific: YERSINIA PESTIS
    Organism Taxid: 632
    Strain: CO92
    Synonym: PROLINE-SPECIFIC AMINOPEPTIDASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 10)

Asymmetric/Biological Unit (5, 10)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2EDO3Ligand/Ion1,2-ETHANEDIOL
3MG4Ligand/IonMAGNESIUM ION
4P6G1Ligand/IonHEXAETHYLENE GLYCOL
5PGE1Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:258 , ASP A:269 , THR A:271 , GLU A:405 , MG A:502 , HOH A:1083BINDING SITE FOR RESIDUE MG A 501
02AC2SOFTWAREASP A:269 , HIS A:352 , THR A:380 , GLU A:382 , GLU A:405 , MG A:501 , HOH A:1083BINDING SITE FOR RESIDUE MG A 502
03AC3SOFTWARETYR A:227 , ILE A:230 , LEU A:240 , HIS A:241 , ASP A:258 , HIS A:348 , HIS A:359 , GLU A:382 , ARG A:403 , HOH A:837 , ASP B:36BINDING SITE FOR RESIDUE 1PE A 503
04AC4SOFTWAREASP A:109 , ASN A:112 , ASN A:137 , ILE A:138 , ALA A:141 , HOH A:826 , HOH A:903BINDING SITE FOR RESIDUE PGE A 504
05AC5SOFTWAREARG A:147 , PRO A:157 , ALA A:158 , HOH A:1162 , GLN B:129 , LEU B:160 , HOH B:615BINDING SITE FOR RESIDUE EDO A 505
06AC6SOFTWAREASP B:269 , HIS B:352 , THR B:380 , GLU B:382 , GLU B:405 , MG B:502 , HOH B:844BINDING SITE FOR RESIDUE MG B 501
07AC7SOFTWAREASP B:258 , ASP B:269 , THR B:271 , GLU B:405 , MG B:501 , HOH B:844BINDING SITE FOR RESIDUE MG B 502
08AC8SOFTWAREASP A:36 , PHE A:87 , ARG A:151 , TYR B:227 , ILE B:230 , LEU B:240 , HIS B:241 , ASP B:258 , HIS B:348 , HIS B:359 , GLU B:382 , EDO B:505 , HOH B:781 , HOH B:844BINDING SITE FOR RESIDUE P6G B 503
09AC9SOFTWAREGLN A:129 , LEU A:160 , HOH A:615 , HOH A:809 , ARG B:147 , PRO B:157 , ALA B:158BINDING SITE FOR RESIDUE EDO B 504
10BC1SOFTWAREPHE A:150 , ARG A:151 , ARG B:369 , P6G B:503BINDING SITE FOR RESIDUE EDO B 505

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PV4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PV4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PV4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PV4)

(-) Exons   (0, 0)

(no "Exon" information available for 4PV4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:436
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4pv4a1 A:1-174 automated matches                                                                                                                                             d4pv4a2 A:175-436 automated matches                                                                                                                                                                                                                                    SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh...eeeeee.....eee..ee.....hhhhhhhhh......eeeeeeee..eeeeeeee...hhhhhhhhh......hhhhhhh..eeee..hhhhhhhhhhh...eee.....hhhhhhhhhhhhhhhhhhhhhh.....eee.hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh...ee....eeee.hhhhh..............eeeeee.eee..ee..eeeeee.....hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.....hhhhhhhh......................................eeee..eeee......hhhhh.eeee..eeeee....eee.......hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pv4 A   1 MTQQEYQNRRQALLAKMAPGSAAIIFAAPEATRSADSEYPYRQNSDFSYLTGFNEPEAVLILVKSDETHNHSVLFNRIRDLTAEIWFGRRLGQEAAPTKLAVDRALPFDEINEQLYLLLNRLDVIYHAQGQYAYADNIVFAALEKLRHGFRKNLRAPATLTDWRPWLHEMRLFKSAEEIAVLRRAGEISALAHTRAMEKCRPGMFEYQLEGEILHEFTRHGARYPAYNTIVGGGENGCILHYTENECELRDGDLVLIDAGCEYRGYAGDITRTFPVNGKFTPAQRAVYDIVLAAINKSLTLFRPGTSIREVTEEVVRIMVVGLVELGILKGDIEQLIAEQAHRPFFMHGLSHWLGMDVHDVGDYGSSDRGRILEPGMVLTVEPGLYIAPDADVPPQYRGIGIRIEDDIVITATGNENLTASVVKDPDDIEALMALN 436
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430      


Chain B from PDB  Type:PROTEIN  Length:436
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4pv4b1 B:1-174 automated matches                                                                                                                                             d4pv4b2 B:175-436 automated matches                                                                                                                                                                                                                                    SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh...eeeeee.....eee..ee.....hhhhhhhhh......eeeeeeee..eeeeeeee...hhhhhhhhh..hhhhhhhhhhh..eeee..hhhhhhhhhhh...eee.....hhhhhhhhhhhhhhhhhhhhhh.....eee.hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh...ee....eeee.hhhhh..............eeeeee.eee..ee..eeeeee.....hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.....hhhhhhhh......................................eeee..eeee......hhhhh.eeee..eeeee....eee.......hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pv4 B   1 MTQQEYQNRRQALLAKMAPGSAAIIFAAPEATRSADSEYPYRQNSDFSYLTGFNEPEAVLILVKSDETHNHSVLFNRIRDLTAEIWFGRRLGQEAAPTKLAVDRALPFDEINEQLYLLLNRLDVIYHAQGQYAYADNIVFAALEKLRHGFRKNLRAPATLTDWRPWLHEMRLFKSAEEIAVLRRAGEISALAHTRAMEKCRPGMFEYQLEGEILHEFTRHGARYPAYNTIVGGGENGCILHYTENECELRDGDLVLIDAGCEYRGYAGDITRTFPVNGKFTPAQRAVYDIVLAAINKSLTLFRPGTSIREVTEEVVRIMVVGLVELGILKGDIEQLIAEQAHRPFFMHGLSHWLGMDVHDVGDYGSSDRGRILEPGMVLTVEPGLYIAPDADVPPQYRGIGIRIEDDIVITATGNENLTASVVKDPDDIEALMALN 436
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PV4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PV4)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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