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(-) Description

Title :  SHEWANELLA ONEIDENSIS TOXIN ANTITOXIN SYSTEM TOXIN PROTEIN HIPA BOUND WITH AMPPNP AND MG
 
Authors :  Y. Wen, E. Behiels, J. Felix, J. Elegheert, B. Vergauwen, B. Devreese, S
Date :  12 Mar 14  (Deposition) - 06 Aug 14  (Release) - 17 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.83
Chains :  Asym./Biol. Unit :  A
Keywords :  Toxin Antitoxin System, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Wen, E. Behiels, J. Felix, J. Elegheert, B. Vergauwen, B. Devreese, S. N. Savvides
The Bacterial Antitoxin Hipb Establishes A Ternary Complex With Operator Dna And Phosphorylated Toxin Hipa To Regulate Bacterial Persistence.
Nucleic Acids Res. V. 42 10134 2014
PubMed-ID: 25056321  |  Reference-DOI: 10.1093/NAR/GKU665

(-) Compounds

Molecule 1 - TOXIN-ANTITOXIN SYSTEM TOXIN HIPA FAMILY
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: SO_0706
    Organism Scientific: SHEWANELLA ONEIDENSIS
    Organism Taxid: 211586
    Strain: MR-1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG2Ligand/IonMAGNESIUM ION
3NA1Ligand/IonSODIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:328 , ANP A:503 , HOH A:857 , HOH A:858BINDING SITE FOR RESIDUE MG A 501
2AC2SOFTWAREASN A:311 , ASP A:328 , ANP A:503 , HOH A:907BINDING SITE FOR RESIDUE MG A 502
3AC3SOFTWAREALA A:149 , GLY A:150 , VAL A:151 , GLN A:152 , LYS A:154 , ILE A:176 , LYS A:178 , ALA A:204 , VAL A:219 , GLU A:220 , ARG A:221 , PHE A:222 , ASP A:223 , ASP A:306 , HIS A:308 , LYS A:310 , ASN A:311 , TYR A:327 , ASP A:328 , MG A:501 , MG A:502 , HOH A:611 , HOH A:801 , HOH A:802 , HOH A:803 , HOH A:857 , HOH A:858 , HOH A:859 , HOH A:890 , HOH A:907 , HOH A:921BINDING SITE FOR RESIDUE ANP A 503
4AC4SOFTWAREALA A:305 , GLN A:341 , HOH A:644 , HOH A:766 , HOH A:963BINDING SITE FOR RESIDUE NA A 504

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PU5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PU5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PU5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PU5)

(-) Exons   (0, 0)

(no "Exon" information available for 4PU5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:438
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhheeeeee..eeeeeeeee....eeeeeehhhhhhhh.............hhhhhhhhhhh....hhhhhhhhhhhh....hhhhhhhhhh......eeeee........eeee.hhhhhhhhhhh.......ee..ee.........eeeeee....eeeee......eeee.....hhhhhhhhhhhhhhhh......eeeeee..eeeeeee...eee......eee..eeehhhhhh.hhhhh..................hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.........eeeee..eeee.......hhhhh...............hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4pu5 A  -4 PRGSHMSTAKTLTLEMHLGDLMIGELSFDATADTFAVHYTKDWQQSGFPLSPTIPLDGTGTSNQISMFLVNLLPENKGLDYLIESLGVSKGNTFALIRAIGLDTAGAIAFVPKGALLPETQLRPIKAEEVIQRIEDPTMWPMEIWDGKPRLSVAGVQPKLNLFYNGKEFAFAEGTLSSTHIVKFEKYHHLVINEFITMRLAKVLGMNVANVDIVHFGRYKALCVERFDRRNIPGEQRVLRRHIVDSCQALGFSVSKKYERNFGTGRDVKDIREGVSFNRLFSLAAKCRNPVAAKQDMLQWALFNLLTGNADAHGKNYSFFMTPSGMEPTPWYDLVSVDMYEDFEQQLAMAIDDEFDPNSIYAYQLAAFMDGLGLPRNLLISNLTRIARRIPQAIAEVILMLPPLDEDEASFVAHYKTQLLARCERYLGFVDEVRDVEV 433
                                     5        15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PU5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PU5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PU5)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HIPA_SHEON | Q8EIX3: 4pu3 4pu4

(-) Related Entries Specified in the PDB File

4pu3 4pu4