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(-) Description

Title :  STRUCTURE OF INITIATOR
 
Authors :  M. A. Schumacher
Date :  10 Mar 14  (Deposition) - 25 Jun 14  (Release) - 23 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Replication Initiation, Multidrug Resistance, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Schumacher, N. K. Tonthat, S. M. Kwong, N. B. Chinnam, M. A. Liu, R. A. Skurray, N. Firth
Mechanism Of Staphylococcal Multiresistance Plasmid Replication Origin Assembly By The Repa Protein.
Proc. Natl. Acad. Sci. Usa V. 111 9121 2014
PubMed-ID: 24927575  |  Reference-DOI: 10.1073/PNAS.1406065111

(-) Compounds

Molecule 1 - REPLICATION INITIATOR A FAMILY PROTEIN
    Chains: A, C, D, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: TERRAMER
    Gene: CA347_2788, REPA
    Organism Scientific: STAPHYLOCOCCUS AUREUS CA-347
    Organism Taxid: 1323661

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 7)

Asymmetric/Biological Unit (1, 7)
No.NameCountTypeFull Name
1SO47Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:11 , ARG A:44BINDING SITE FOR RESIDUE SO4 A 201
2AC2SOFTWAREASP A:35 , LEU A:75 , CYS A:77 , HOH A:320BINDING SITE FOR RESIDUE SO4 A 202
3AC3SOFTWARECYS A:77 , LYS A:78 , LYS A:81 , LYS D:78BINDING SITE FOR RESIDUE SO4 A 203
4AC4SOFTWAREASN A:68 , LYS A:86 , GLN A:97 , ARG A:99 , ASN A:106BINDING SITE FOR RESIDUE SO4 A 204
5AC5SOFTWARELYS B:81 , LYS C:81 , LYS C:84BINDING SITE FOR RESIDUE SO4 C 201
6AC6SOFTWAREASN B:34 , GLU C:80 , HOH C:314 , ASN D:34 , ASP D:35 , HOH D:306 , HOH D:318BINDING SITE FOR RESIDUE SO4 D 201
7AC7SOFTWAREASN B:11 , ARG D:44BINDING SITE FOR RESIDUE SO4 D 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PT7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PT7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PT7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PT7)

(-) Exons   (0, 0)

(no "Exon" information available for 4PT7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:131
                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhh.....hhhhhh.......hhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee........eeee.....hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pt7 A   2 QNQYFTVQENYKERFYQIPKVFFTSENYKNLTNDMKIAYAILRDRLNLSIKNSWVDEDGNIYFVYSNEKLMEILNCKKEKLTKIKKGLENDGLLIQKRRGLNKPNILYLMKPIVTERDIYKIEKEENDVEP 132
                                    11        21        31        41        51        61        71        81        91       101       111       121       131 


Chain B from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhh.eeeeehhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee........eeee.....hhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4pt7 B   2 QNQYFTVQENYKERFYQIPKVFFTSENYKNLTNDMKIAYAILRDRLNLSIKNSWVDEDGNIYFVYSNEKLMEILNCKKEKLTKIKKGLENDGLLIQKRRGLNKPNILYLMKPIVTERDIYKIEKEENDVEPY 133
                                    11        21        31        41        51        61        71        81        91       101       111       121       131  


Chain C from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhh......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhh..hhhhhhhhhhhhhhh..eeee........eeee.....hhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4pt7 C   2 QNQYFTVQENYKERFYQIPKVFFTSENYKNLTNDMKIAYAILRDRLNLSIKNSWVDEDGNIYFVYSNEKLMEILNCKKEKLTKIKKGLENDGLLIQKRRGLNKPNILYLMKPIVTERDIYKIEKEENDVEPY 133
                                    11        21        31        41        51        61        71        81        91       101       111       121       131  


Chain D from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhh.eeeee.hhhh.......hhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhh..hhhhhhhhhhhhhhh..eeee........eeee.....hhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4pt7 D   2 QNQYFTVQENYKERFYQIPKVFFTSENYKNLTNDMKIAYAILRDRLNLSIKNSWVDEDGNIYFVYSNEKLMEILNCKKEKLTKIKKGLENDGLLIQKRRGLNKPNILYLMKPIVTERDIYKIEKEENDVEPY 133
                                    11        21        31        41        51        61        71        81        91       101       111       121       131
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PT7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PT7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PT7)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4PT7)

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 Related Entries

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(-) Related Entries Specified in the PDB File

4pqk 4pql 4pta