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(-) Description

Title :  XYLANASE T6 (XT6) FROM GEOBACILLUS STEAROTHERMOPHILUS IN COMPLEX WITH XYLOHEXAOSE
 
Authors :  R. D. Dann, H. V. Solomon, S. Lansky, A. Ben-David, N. Lavid, R. Salama, Y G. Shoham
Date :  06 Mar 14  (Deposition) - 11 Mar 15  (Release) - 11 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Tim Barrel, Hydrolase, Carbohydrate/Sugar Binding, Extracellular (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. D. Dann, H. V. Solomon, S. Lansky, A. Ben-David, N. Lavid, R. Salama, Y. Shoham, G. Shoham
Xylanase T6 (Xt6) From Geobacillus Stearothermophilus In Complex With Xylohexaose
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ENDO-1,4-BETA-XYLANASE
    Chains: A
    EC Number: 3.2.1.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Mutation: YES
    Organism Scientific: GEOBACILLUS STEAROTHERMOPHILUS
    Organism Taxid: 1422
    Synonym: XYLANASE, 1,4-BETA-D-XYLAN XYLANOHYDROLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 15)

Asymmetric/Biological Unit (4, 15)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2SO41Ligand/IonSULFATE ION
3XYP6Ligand/IonBETA-D-XYLOPYRANOSE
4ZN6Ligand/IonZINC ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:297 , ALA A:374 , ASP A:377 , LYS A:379 , HOH A:585 , HOH A:953 , HOH A:957BINDING SITE FOR RESIDUE ZN A 407
02AC2SOFTWAREASP A:21 , HOH A:550 , HOH A:615 , HOH A:771 , HOH A:809 , HOH A:954BINDING SITE FOR RESIDUE ZN A 408
03AC3SOFTWAREHIS A:11 , GLU A:27 , ASP A:365 , CL A:412BINDING SITE FOR RESIDUE ZN A 409
04AC4SOFTWAREASP A:377 , HIS A:378 , LYS A:379BINDING SITE FOR RESIDUE SO4 A 410
05AC5SOFTWAREASP A:282 , HIS A:378 , HOH A:672 , HOH A:959 , HOH A:963BINDING SITE FOR RESIDUE ZN A 411
06AC6SOFTWAREHIS A:11 , ASN A:26 , GLU A:27 , ASP A:365 , ZN A:409BINDING SITE FOR RESIDUE CL A 412
07AC7SOFTWAREGLU A:58 , HIS A:322 , XYP A:402 , CL A:414 , HOH A:961BINDING SITE FOR RESIDUE ZN A 413
08AC8SOFTWAREGLU A:58 , HIS A:322 , TRP A:324 , XYP A:402 , ZN A:413 , HOH A:961BINDING SITE FOR RESIDUE CL A 414
09AC9SOFTWAREGLU A:27 , SER A:307 , ILE A:310 , HOH A:551 , HOH A:576BINDING SITE FOR RESIDUE ZN A 415
10BC1SOFTWAREGLU A:58 , ASN A:59 , LYS A:62 , HIS A:95 , GLN A:102 , ASN A:158 , GLN A:159 , ASN A:204 , GLN A:234 , HIS A:236 , GLN A:238 , TRP A:241 , GLU A:265 , TRP A:273 , TRP A:316 , TRP A:324 , ARG A:328 , ZN A:413 , CL A:414 , HOH A:537 , HOH A:566 , HOH A:745 , HOH A:773 , HOH A:792 , HOH A:861 , HOH A:947BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 401 TO 406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PRW)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1His A:95 -Thr A:96
2Glu A:208 -Pro A:209
3Trp A:241 -Pro A:242
4Trp A:273 -Pro A:274

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PRW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PRW)

(-) Exons   (0, 0)

(no "Exon" information available for 4PRW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:371
                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh.hhhhhhh...eeeeeehhhhhhhhhhhhhhhhhh.eeee....hhhhhh.......hhhhhhhhhhhhhhh.eeeeeeee.....hhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee...........hhhhhhhhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhhhh.....eeee..eee....hhhhhhhhhhhhhhh..eeeeeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee.......hhhhhhh.eee.....ee........eee.................hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4prw A   9 KPHISALNAPQLDQRYKNEFTIGAAVEPYQLQNEKDVQMLKRHFNSIVAENVMKPISIQPEEGKFNFEQADRIVKFAKANGMDIRFHTLVWHSQVPQWFFLDKEGKPMVNETDPVKREQNKQLLLKRLETHIKTIVERYKDDIKYWDVVNQVVGDDGKLRNSPWYQIAGIDYIKVAFQAARKYGGDNIKLYMNDYNTEVEPKRTALYNLVKQLKEEGVPIDGIGHQSHIQIGWPSEAEIEKTINMFAALGLDNQITELDVSMYGWPPRAYPTYDAIPKQKFLDQAARYDRLFKLYEKLSDKISNVTFWGIADNHTWLDSRADVYYDANGNVVVDPNAPYAKVEKGKGKDAPFVFGPDYKVKPAYWAIIDHK 379
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PRW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PRW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PRW)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  XYN1_GEOSE | P40943
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        XYN1_GEOSE | P40943: 1hiz 1r85 1r86 1r87 3mmd 4pud 4pue

(-) Related Entries Specified in the PDB File

1hiz 1r85 1r86 1r87 3mmd