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(-) Description

Title :  E. COLI GYRB 43-KDA N-TERMINAL FRAGMENT IN COMPLEX WITH ADP
 
Authors :  F. V. Stanger, T. Schirmer
Date :  06 Mar 14  (Deposition) - 24 Sep 14  (Release) - 24 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Gyrb, Atp Hydrolysis, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. V. Stanger, C. Dehio, T. Schirmer
Structure Of The N-Terminal Gyrase B Fragment In Complex With Adppi Reveals Rigid-Body Motion Induced By Atp Hydrolysis
Plos One V. 9 07289 2014
PubMed-ID: 25202966  |  Reference-DOI: 10.1371/JOURNAL.PONE.0107289

(-) Compounds

Molecule 1 - GYRB
    Chains: A
    EC Number: 5.99.1.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRSFDUET1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 2-392
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG1Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:5 , ILE A:10 , ASN A:46 , GLU A:50 , ASP A:73 , ILE A:78 , ILE A:94 , ALA A:100 , GLY A:101 , GLY A:102 , LYS A:103 , TYR A:109 , GLY A:114 , LEU A:115 , HIS A:116 , GLY A:117 , VAL A:118 , GLY A:119 , VAL A:120 , THR A:165 , MG A:402 , HOH A:533 , HOH A:534 , HOH A:541 , HOH A:551 , HOH A:574 , HOH A:625BINDING SITE FOR RESIDUE ADP A 401
2AC2SOFTWAREASN A:46 , ADP A:401 , HOH A:527BINDING SITE FOR RESIDUE MG A 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PRV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PRV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PRV)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:369
                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh.....hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh....eeeeee.....eeeee...............hhhhhhhhh....................hhhhhhhhheeeeeeeeee..eeeeeeee..ee....eeeee....eeeeeeee...........hhhhhhhhhhhhhhhh...eeeeee.....eeee...hhhhhhhhhhhh.........eeeeeee..eeeeeeeee......eeeeee..ee....hhhhhhhhhhhhhhhhhhhhhh.....eeeeeeee...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4prv A   5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAAR 386
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       317       327       337       347       357       367       377         
                                                                                                                                                                                                                                                                                                                                   302|                                                                      
                                                                                                                                                                                                                                                                                                                                    316
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PRV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PRV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PRV)

(-) Gene Ontology  (23, 23)

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  GYRB_ECOLI | P0AES6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GYRB_ECOLI | P0AES6: 1aj6 1ei1 1kzn 3g7e 3nuh 4duh 4hyp 4kfg 4prx 4pu9 4wub 4wuc 4wud 4xtj 4zvi 5l3j

(-) Related Entries Specified in the PDB File

1ei1 GYRB IN COMPLEX WITH AMPPNP
4prx GYRB IN COMPLEX WITH ADP+PI
4pu9
4r1f