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(-) Description

Title :  URATE OXIDASE AZIDE URIC ACID TERNARY COMPLEX
 
Authors :  N. Colloc'H, T. Prange
Date :  05 Mar 14  (Deposition) - 24 Dec 14  (Release) - 28 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.16
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Inhibition, Degradation Mechanism, Peroxisome, Purine Metabolism, Heterotetramer, Oxidoreductase, Oxygen Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Gabison, N. Colloc'H, T. Prange
Azide Inhibition Of Urate Oxidase.
Acta Crystallogr. , Sect. F V. 70 896 2014
PubMed-ID: 25005084  |  Reference-DOI: 10.1107/S2053230X14011753
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - URICASE
    Chains: A
    EC Number: 1.7.3.3
    Engineered: YES
    Expression System: SACCHAROMYCES CEREVISIAE
    Expression System Common: YEAST
    Expression System Taxid: 4932
    Fragment: UNP RESIDUES 2-296
    Gene: UAZ, UOX
    Organism Scientific: ASPERGILLUS FLAVUS
    Organism Taxid: 5059
    Synonym: URATE OXIDASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric Unit (4, 5)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2AZI2Ligand/IonAZIDE ION
3NA1Ligand/IonSODIUM ION
4URC1Ligand/IonURIC ACID
Biological Unit 1 (3, 16)
No.NameCountTypeFull Name
1ACE4Mod. Amino AcidACETYL GROUP
2AZI8Ligand/IonAZIDE ION
3NA-1Ligand/IonSODIUM ION
4URC4Ligand/IonURIC ACID

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:54 , ALA A:56 , THR A:57 , ASP A:58 , PHE A:159 , LEU A:170 , ARG A:176 , SER A:226 , VAL A:227 , GLN A:228 , ASN A:254 , AZI A:402 , HOH A:1008BINDING SITE FOR RESIDUE URC A 401
2AC2SOFTWARELYS A:10 , THR A:57 , ASN A:254 , HIS A:256 , GLY A:286 , ILE A:288 , URC A:401BINDING SITE FOR RESIDUE AZI A 402
3AC3SOFTWAREALA A:5 , ALA A:6 , ARG A:7 , HOH A:1092 , HOH A:1212BINDING SITE FOR RESIDUE AZI A 403
4AC4SOFTWAREILE A:88 , TYR A:91 , ASN A:92 , ILE A:94 , GLU A:136 , HOH A:1208BINDING SITE FOR RESIDUE NA A 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PR8)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Thr A:74 -Pro A:75
2Asp A:283 -Pro A:284

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PR8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PR8)

(-) Exons   (0, 0)

(no "Exon" information available for 4PR8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:296
                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeeeeeeeee......eeeeeeeeeeeeee.hhhhhhh.hhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh..eeeeeeeeeee..eeeee..eeeeeeee.....eeeeeeeee....eeeeeeeeeeeeee........................eeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh..eeeeeeeeee..eee...........hhhhh..eee.....eeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pr8 A   0 xSAVKAARYGKDNVRVYKVHKDEKTGVQTVYEMTVCVLLEGEIETSYTKADNSVIVATDSIKNTIYITAKQNPVTPPELFGSILGTHFIEKYNHIHAAHVNIVCHRWTRMDIDGKPHPHSFIRDSEEKRNVQVDVVEGKGIDIKSSLSGLTVLKSTNSQFWGFLRDEYTTLKETWDRILSTDVDATWQWKNFSGLQEVRSHVPKFDATWATAREVTLKTFAEDNSASVQATMYKMAEQILARQQLIETVEYSLPNKHYFEIDLSWHKGLQNTGKNAEVFAPQSDPNGLIKCTVGRS 295
                            |        9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289      
                            |                                                                                                                                                                                                                                                                                                       
                            0-ACE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PR8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PR8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PR8)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)

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  1.7.3.3
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        URIC_ASPFL | Q00511: 1r4s 1r4u 1r51 1r56 1wrr 1ws2 1ws3 1xt4 1xxj 1xy3 2fub 2fxl 2iba 2ic0 2icq 2pes 2zka 2zkb 3bjp 3bk8 3cks 3cku 3f2m 3gko 3l8w 3l9g 3lbg 3ld4 3obp 3p9f 3p9o 3pjk 3pk3 3pk4 3pk5 3pk6 3pk8 3pkf 3pkg 3pkh 3pkk 3pkl 3pks 3pkt 3pku 3ple 3plg 3plh 3pli 3plj 3plm 4cw0 4cw2 4cw3 4cw6 4d12 4d13 4d17 4d19 4fsk 4n3m 4n9m 4n9s 4n9v 4op6 4op9 4oqc 4poe 4puv 5frc

(-) Related Entries Specified in the PDB File

3bjp URATE OXIDASE CYANIDE URIC ACID TERNARY COMPLEX
3ld4 URATE OXIDASE COMPLEXED WITH 8-NITRO XANTHINE
3p9f URATE OXIDASE-AZAXANTHINE-AZIDE TERNARY COMPLEX
4fsk URATE OXIDASE-AZIDE COMPLEX IN ANAEROBIC CONDITIONS
4oqc URATE OXIDASE CO-CRYSTALLIZED WITH AZIDE
4poe URATE OXIDASE CO-CRYSTALLIZED WITH URIC ACID AND AZIDE
4puv URATE OXIDASE-DI-AZIDE COMPLEX