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(-) Description

Title :  CRYSTAL STRUCTURE OF POB3 MIDDLE DOMAIN AT 1.65A
 
Authors :  H. Liu
Date :  28 Feb 14  (Deposition) - 26 Mar 14  (Release) - 29 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A
Keywords :  Double Pleckstrin Homology (Ph)Architecture, Replication, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Liu
Crystal Structure Of Pob3 Middle Domain At 1. 65A
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - FACT COMPLEX SUBUNIT POB3
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 232-473
    Gene: POB3, YML069W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: FACILITATES CHROMATIN TRANSCRIPTION COMPLEX SUBUNIT POB3

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1MLA1Ligand/IonMALONIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:262 , SER A:265 , ARG A:267 , LYS A:276 , GLU A:325 , LYS A:352 , HOH A:658 , HOH A:674 , HOH A:697 , HOH A:728BINDING SITE FOR RESIDUE MLA A 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PQ0)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Thr A:252 -Pro A:253
2Glu A:303 -Pro A:304
3Leu A:405 -Thr A:406
4Lys A:407 -Pro A:408

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PQ0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PQ0)

(-) Exons   (0, 0)

(no "Exon" information available for 4PQ0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:233
                                                                                                                                                                                                                                                                         
               SCOP domains d4pq0a_ A: automated matches                                                                                                                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeee..eeeeeee...eeeee....eeeee...eeeeeeee.....eeeeeeeeeeeeee..eeeeeeeeeee...eeeee...hhhhhhhhh......eeeeehhhhhhhhhhhhhh..ee.............eeeee..eeeeeee...eeeee....eeee...eeeeeee.eeeeeeee.hhh.eeeeeeee..hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pq0 A 232 ADIGEVAGDAIVSFQDVFFTTPRGRYDIDIYKNSIRLRGKTYEYKLQHRQIQRIVSLPKADDIHHLLVLAIEPPLRQGQTTYPFLVLQFQKDEETEVQLNLEDEDYEENYKDKLKKQYDAKTHIVLSHVLKGLTDRRVIVPGEYKSKYDQCAVSCSFKANEGYLYPLDNAFFFLTKPTLYIPFSDVSMVNISRTFDLEVVLRSNRGSTTFANISKEEQQLLEQFLKSKNLRVK 473
                                   241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421 ||    440       450       460       470   
                                                                                                                                                                                                                         423|                                        
                                                                                                                                                                                                                          433
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PQ0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PQ0)

(-) Gene Ontology  (19, 19)

Asymmetric/Biological Unit(hide GO term definitions)

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  4pq0
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POB3_YEAST | Q04636: 2gcj 2gcl 3f5r

(-) Related Entries Specified in the PDB File

2gcj 2gcl