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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE ACYLHYDROLASE (BF3764) FROM BACTEROIDES FRAGILIS NCTC 9343 AT 2.00 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  27 Feb 14  (Deposition) - 02 Apr 14  (Release) - 02 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C  (2x)
Keywords :  Pf13472 Family, Gdsl-Like Lipase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Acylhydrolase (Bf3764) From Bacteroides Fragilis Nctc 9343 At 2. 00 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE ACYLHYDROLASE
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: PB1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 27-235
    Gene: BF9343_3663
    Organism Scientific: BACTEROIDES FRAGILIS
    Organism Taxid: 272559
    Strain: ATCC 25285 / NCTC 9343

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): AB 
Biological Unit 2 (2x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric Unit (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4PPY)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PPY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PPY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PPY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PPY)

(-) Exons   (0, 0)

(no "Exon" information available for 4PPY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:209
                                                                                                                                                                                                                                                 
               SCOP domains d4ppya_ A: automated matches                                                                                                                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhh.........eeeeehhhhhhhhhhhhhhhhhhh.eeee....hhhhhhhhhhhhhhhhh..eeee..hhhhhh......hhhhhhhhhhhhhhhhhhh..eeeee...............hhhhhhhhhhhhhhhhhhhh...eehhhhhhee....ee.hhhh......hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ppy A  27 QEKDWANLQRYAQQNAELPKPDKNEKRVVFmGNSITEGWVNTHPDFFKSNGYIGRGIGGQTSYQFLVRFREDVINLSPALVVINAATNDIAENTGAYHEDRTFGNIVSmVELAKANHIKVILTTTLPAAAFGWNPSIKDAPQKIASLNARLKAYAQTNKIPFVDYYSSmVSGSNKALNPAYTKDGVHPTSEGYDVmENLIQQAINKTLR 235
                                    36        46        56|       66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216     | 226         
                                                         57-MSE                                                                       135-MSE                                                     195-MSE                    222-MSE         


Chain B from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                
               SCOP domains d4ppyb_ B: automated matches                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhh...hhhhh.eeeeehhhhhhhhhhhhhhhhhhheeeee....hhhhhhhhhhhhhhhhh..eeee..hhhhhh......hhhhhhhhhhhhhhhhhhh..eeeee...............hhhhhhhhhhhhhhhhhhhh...eehhhhhhee....ee.hhhh......hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ppy B  28 EKDWANLQRYAQQNAELPKPDKNEKRVVFmGNSITEGWVNTHPDFFKSNGYIGRGIGGQTSYQFLVRFREDVINLSPALVVINAATNDIAENTGAYHEDRTFGNIVSmVELAKANHIKVILTTTLPAAAFGWNPSIKDAPQKIASLNARLKAYAQTNKIPFVDYYSSmVSGSNKALNPAYTKDGVHPTSEGYDVmENLIQQAINKTLR 235
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217    |  227        
                                                        57-MSE                                                                       135-MSE                                                     195-MSE                    222-MSE         


Chain C from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                
               SCOP domains d4ppyc_ C: automated matches                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhh.........eeeeehhhhhhhhhhhhhhhhhhheeeee....hhhhhhhhhhhhhhhhh..eeee..hhhhhh......hhhhhhhhhhhhhhhhhhh..eeeee...............hhhhhhhhhhhhhhhhhhhh...eehhhhhhee....ee.hhhh......hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ppy C  28 EKDWANLQRYAQQNAELPKPDKNEKRVVFmGNSITEGWVNTHPDFFKSNGYIGRGIGGQTSYQFLVRFREDVINLSPALVVINAATNDIAENTGAYHEDRTFGNIVSmVELAKANHIKVILTTTLPAAAFGWNPSIKDAPQKIASLNARLKAYAQTNKIPFVDYYSSmVSGSNKALNPAYTKDGVHPTSEGYDVmENLIQQAINKTLR 235
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217    |  227        
                                                        57-MSE                                                                       135-MSE                                                     195-MSE                    222-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PPY)

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(no "Pfam Domain" information available for 4PPY)

(-) Gene Ontology  (1, 1)

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