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(-) Description

Title :  THE CRYSTAL STRUCTURE OF A PUTATIVE SAM-DEPENDENT METHYLTRANSFERASE, YTQB, FROM BACILLUS SUBTILIS
 
Authors :  S. C. Park, W. S. Song, S. I. Yoon
Date :  26 Feb 14  (Deposition) - 02 Apr 14  (Release) - 17 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Rossmann-Like Fold, A Putative Methyltransferase, S-Adenosyl-L- Methionine, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. C. Park, W. S. Song, S. I. Yoon
Structural Analysis Of A Putative Sam-Dependent Methyltransferase, Ytqb, From Bacillus Subtilis
Biochem. Biophys. Res. Commun. V. 446 921 2014
PubMed-ID: 24637210  |  Reference-DOI: 10.1016/J.BBRC.2014.03.026

(-) Compounds

Molecule 1 - PUTATIVE RNA METHYLASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: A MODIFIED PET49B
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BSUW23_14785, YTQB
    Organism Scientific: BACILLUS SUBTILIS SUBSP. SPIZIZENII
    Organism Taxid: 655816
    Strain: ATCC 23059 / NRRL B-14472 / W23

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4PON)

(-) Sites  (0, 0)

(no "Site" information available for 4PON)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PON)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PON)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PON)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PON)

(-) Exons   (0, 0)

(no "Exon" information available for 4PON)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhh......eeeee.hhhhhhhhhhhhhh..eeeeeeee..hhhhhhhhhhhhhheeeeeeeeeee....hhhhhhhh.....eeeeeeee........eeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pon A   1 MILKKILPYSKELLKMAAGEGDIVIDATMGNGHDTQFLAELVGENGHVYAFDIQESAVANTKERLGEAYQARTTLFHKSHDKIAKSLPPETHGKVAAAVFNLGNGSSTIKAIEQLLSIMKDEGLIVLVVYHGNDVLDFCRNLDQQAARVLTYGFINQQNDPPFIVAIEKKAQ 191
                                    10        20        30        40        50        60        70        80        90       100  ||   121       131       141 ||    159       169       179       189  
                                                                                                                                103|                         143|                                       
                                                                                                                                 115                          152                                       


Chain B from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhh......eeeee.hhhhhhhhhhhhhh..eeeeeeee..hhhhhhhhhhhhheeeeeeeeeee...hhhhhhhhh.....eeeeeeee........eeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pon B   1 MILKKILPYSKELLKMAAGEGDIVIDATMGNGHDTQFLAELVGENGHVYAFDIQESAVANTKERLGEAYQARTTLFHKSHDKIAKSLPPETHGKVAAAVFNLGGSSTIKAIEQLLSIMKDEGLIVLVVYHKNDVLDFCRNLDQQAARVLTYGFINQQNDPPFIVAIEKKAQ 191
                                    10        20        30        40        50        60        70        80        90       100  ||   122       132       142|      160       170       180       190 
                                                                                                                                103|                       142|                                        
                                                                                                                                 116                        151
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PON)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PON)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        E0TY72_BACPZ | E0TY72: 4poo

(-) Related Entries Specified in the PDB File

4poo