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(-) Description

Title :  A DE NOVO DESIGNED HEXAMERIC COILED COIL CC-HEX2
 
Authors :  C. W. Wood, A. J. Burton, A. R. Thomson, R. L. Brady, D. N. Woolfson
Date :  23 May 14  (Deposition) - 22 Oct 14  (Release) - 17 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Alpha-Helical Barrel, Coiled Coil, Protein Design, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. R. Thomson, C. W. Wood, A. J. Burton, G. J. Bartlett, R. B. Sessions, R. L. Brady, D. N. Woolfson
Computational Design Of Water-Soluble Alpha-Helical Barrels
Science V. 346 485 2014
PubMed-ID: 25342807  |  Reference-DOI: 10.1126/SCIENCE.1257452

(-) Compounds

Molecule 1 - CC-HEX2
    Chains: A, B, C, D, E, F
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1ACE5Mod. Amino AcidACETYL GROUP
2EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU E:16 , TRP E:19 , SER E:20 , HOH E:205 , LYS F:22 , LYS F:26 , LYS F:29binding site for residue EPE E 101
2AC2SOFTWAREGLU B:2 , ILE B:3 , ALA B:4 , LYS B:5 , HOH B:101binding site for Di-peptide ACE B 0 and GLY B 1
3AC3SOFTWAREGLU C:2 , ILE C:3 , ALA C:4 , LYS C:5binding site for Di-peptide ACE C 0 and GLY C 1
4AC4SOFTWAREGLU D:2 , ILE D:3 , ALA D:4 , LYS D:5binding site for Di-peptide ACE D 0 and GLY D 1
5AC5SOFTWAREGLU F:2 , ILE F:3 , ALA F:4 , LYS F:5binding site for Di-peptide ACE F 0 and GLY F 1

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PN9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PN9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PN9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PN9)

(-) Exons   (0, 0)

(no "Exon" information available for 4PN9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:30
                                                             
               SCOP domains ------------------------------ SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                  4pn9 A  0 xGEIAKSLKEIAKSLKEIAWSLKEIAKSLK 29
                            |        9        19        29
                            |                             
                            0-ACE                         


Chain B from PDB  Type:PROTEIN  Length:30
                                                             
               SCOP domains ------------------------------ SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                  4pn9 B  0 xGEIAKSLKEIAKSLKEIAWSLKEIAKSLK 29
                            |        9        19        29
                            0-ACE                         


Chain C from PDB  Type:PROTEIN  Length:31
                                                              
               SCOP domains ------------------------------- SCOP domains
               CATH domains ------------------------------- CATH domains
               Pfam domains ------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------- PROSITE
                 Transcript ------------------------------- Transcript
                  4pn9 C  0 xGEIAKSLKEIAKSLKEIAWSLKEIAKSLKG 30
                            |        9        19        29 
                            0-ACE                          


Chain D from PDB  Type:PROTEIN  Length:31
                                                              
               SCOP domains ------------------------------- SCOP domains
               CATH domains ------------------------------- CATH domains
               Pfam domains ------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------- PROSITE
                 Transcript ------------------------------- Transcript
                  4pn9 D  0 xGEIAKSLKEIAKSLKEIAWSLKEIAKSLKG 30
                            |        9        19        29 
                            0-ACE                          


Chain E from PDB  Type:PROTEIN  Length:30
                                                             
               SCOP domains ------------------------------ SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                  4pn9 E  1 GEIAKSLKEIAKSLKEIAWSLKEIAKSLKG 30
                                    10        20        30


Chain F from PDB  Type:PROTEIN  Length:30
                                                             
               SCOP domains ------------------------------ SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                  4pn9 F  0 xGEIAKSLKEIAKSLKEIAWSLKEIAKSLK 29
                            |        9        19        29
                            0-ACE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PN9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PN9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PN9)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4PN9)

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  Cis Peptide Bonds
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 Related Entries

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