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(-) Description

Title :  TUBULIN ACETYLTRANSFERASE COMPLEX WITH BISUBSTRATE ANALOG
 
Authors :  A. Szyk, A. Roll-Mecak
Date :  13 May 14  (Deposition) - 13 Aug 14  (Release) - 25 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.35
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Tubulin, Acetyltransferase, Bisubstrate, Coa, Transferase-Peptide Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Szyk, A. M. Deaconescu, J. Spector, B. Goodman, M. L. Valenstein, N. E. Ziolkowska, V. Kormendi, N. Grigorieff, A. Roll-Mecak
Molecular Basis For Age-Dependent Microtubule Acetylation B Tubulin Acetyltransferase.
Cell V. 157 1405 2014
PubMed-ID: 24906155  |  Reference-DOI: 10.1016/J.CELL.2014.03.061

(-) Compounds

Molecule 1 - ALPHA-TUBULIN N-ACETYLTRANSFERASE 1
    Chains: A
    EC Number: 2.3.1.108
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ATAT1, C6ORF134, MEC17, NBLA00487
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TAT,ACETYLTRANSFERASE MEC-17 HOMOLOG
 
Molecule 2 - ACETYL-SER-(N-PROPANOYL-LYS)-ASP--THR-NH2 PEPTIDE
    Chains: B
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Other Details: WITH COVALENTLY LINKED COA, MAKING BISUBSTRATE ANALOG
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 4)

Asymmetric/Biological Unit (4, 4)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2COA1Ligand/IonCOENZYME A
3NH21Mod. Amino AcidAMINO GROUP
4PRK1Mod. Amino AcidN~6~-PROPANOYL-L-LYSINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:58 , ILE A:64 , SER A:83 , SER A:84 , ALA A:85 , ARG A:86 , LYS A:102 , LEU A:122 , ASP A:123 , PHE A:124 , TYR A:125 , ILE A:126 , GLN A:131 , ARG A:132 , HIS A:133 , GLY A:134 , GLY A:136 , ARG A:137 , ASP A:157 , ARG A:158 , SER A:160 , LYS A:162 , LEU A:163 , LYS A:165 , PHE A:166 , LYS A:169 , HIS A:170 , ASN A:182 , PHE A:183 , HOH A:303 , HOH A:323 , HOH A:332 , HOH A:340 , HOH A:358 , HOH A:379 , HOH A:386 , HOH A:393 , HOH A:395 , HOH A:396 , HOH A:521 , HOH A:525 , HOH A:547 , HOH B:101 , HOH B:102 , HOH B:103 , HOH B:105 , HOH B:106binding site for B 1 to 7, bisubstrate analog

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PK2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PK2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PK2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PK2)

(-) Exons   (0, 0)

(no "Exon" information available for 4PK2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:188
                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhh..eeeeee...........eeeeeeeee..eeee.....eeee..eeeeeeee.hhhh..hhhhhhhhhhhhhhh.hhhhheee..hhhhhhhhhhhhh..........ee............ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pk2 A  -1 FTMEFPFDVDALFPERITVLDQHLRPPAVDLQQQIMTIIDELGKASAKAQNLSAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKVGYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRPSQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHPP 196
                                     8        18       |38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188        
                                                      26|                                                                                                                                                               
                                                       37                                                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 4pk2 B   1 xSDxTx   6
                            |  | |
                            1-ACE|
                               4-PRK
                                 6-NH2
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PK2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PK2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PK2)

(-) Gene Ontology  (27, 27)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ATAT_HUMAN | Q5SQI0: 3vwd 3vwe 4b5o 4b5p 4gs4 4if5 4pk3 4u9y 4u9z

(-) Related Entries Specified in the PDB File

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