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(-) Description

Title :  CRYSTAL STRUCTURE OF DESIGNED (SEMET)-CPPR-NRE PROTEIN
 
Authors :  S. C. Coquille, A. Filipovska, T. S. Chia, L. Rajappa, J. P. Lingford, M. F. M. Razif, S. Thore, O. Rackham
Date :  12 May 14  (Deposition) - 24 Dec 14  (Release) - 31 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Designer Rna-Binding Proteins; Pentatricopeptide Repeat; Synthetic Biology; Rna-Protein Interactions, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Coquille, A. Filipovska, T. Chia, L. Rajappa, J. P. Lingford, M. F. Razif, S. Thore, O. Rackham
An Artificial Ppr Scaffold For Programmable Rna Recognition
Nat Commun V. 5 5729 2014
PubMed-ID: 25517350  |  Reference-DOI: 10.1038/NCOMMS6729

(-) Compounds

Molecule 1 - PENTATRICOPEPTIDE REPEAT PROTEIN
    Chains: A
    Engineered: YES
    Organism Scientific: UNIDENTIFIED
    Organism Taxid: 32644
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2MSE5Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:164 , HOH A:505 , HOH A:507 , HOH A:515 , HOH A:517binding site for residue CA A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PJS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PJS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PJS)

(-) Exons   (0, 0)

(no "Exon" information available for 4PJS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pjs A  87 GRLEEALELFEEmKEKGIVPDVVTYTTLISGLGKAGRLEEALELFEEmKEKGIVPNVVTYNTLISGLGKAGRLEEALELFEEmKEKGIVPDVVTYTTLISGLGKAGRLEEALELFEEmKEKGIVPNVVTYNTLISGLGKAGRLEEALELFEEmKEKGIVPDVVTYTTLISGLGKA 261
                                    96  |    106       116       126       136       146       156       166  |    176       186       196       206       216       226       236  |    246       256     
                                       99-MSE                            134-MSE                            169-MSE                            204-MSE                            239-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PJS)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

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(-) Related Entries Specified in the PDB File

4pjq 4pjr